Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
TPM1P09493 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC26.25■■□□□ 1.79
TPM1P09493 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
TPM1P09493 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
TPM1P09493 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
TPM1P09493 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC26.24■■□□□ 1.79
TPM1P09493 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC26.24■■□□□ 1.79
TPM1P09493 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
TPM1P09493 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
TPM1P09493 AC148477.6-201ENST00000623746 465 ntBASIC26.23■■□□□ 1.79
TPM1P09493 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TPM1P09493 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.23■■□□□ 1.79
TPM1P09493 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TPM1P09493 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TPM1P09493 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
TPM1P09493 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TPM1P09493 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
TPM1P09493 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TPM1P09493 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
TPM1P09493 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TPM1P09493 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
TPM1P09493 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
TPM1P09493 DUX4L13-201ENST00000554103 1267 ntBASIC26.21■■□□□ 1.79
TPM1P09493 DUX4L15-201ENST00000611059 1267 ntBASIC26.21■■□□□ 1.79
TPM1P09493 DUX4L23-201ENST00000615195 1269 ntBASIC26.21■■□□□ 1.79
TPM1P09493 DUX4L24-201ENST00000617576 1269 ntBASIC26.21■■□□□ 1.79
TPM1P09493 DUX4L22-201ENST00000618238 1269 ntBASIC26.21■■□□□ 1.79
TPM1P09493 DUX4L20-201ENST00000619712 1269 ntBASIC26.21■■□□□ 1.79
TPM1P09493 DUX4L21-201ENST00000622058 1269 ntBASIC26.21■■□□□ 1.79
TPM1P09493 DUX4L10-201ENST00000622460 1267 ntBASIC26.21■■□□□ 1.79
TPM1P09493 DUX4L25-201ENST00000624915 1269 ntBASIC26.21■■□□□ 1.79
TPM1P09493 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
TPM1P09493 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
TPM1P09493 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
TPM1P09493 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.2■■□□□ 1.79
TPM1P09493 PREB-202ENST00000406567 1910 ntTSL 5 BASIC26.2■■□□□ 1.79
TPM1P09493 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC26.2■■□□□ 1.78
TPM1P09493 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
TPM1P09493 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
TPM1P09493 AL359258.2-201ENST00000564063 1566 ntBASIC26.2■■□□□ 1.78
TPM1P09493 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.19■■□□□ 1.78
TPM1P09493 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
TPM1P09493 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.19■■□□□ 1.78
TPM1P09493 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC26.19■■□□□ 1.78
TPM1P09493 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC26.19■■□□□ 1.78
TPM1P09493 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
TPM1P09493 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC26.18■■□□□ 1.78
TPM1P09493 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
TPM1P09493 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
TPM1P09493 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
TPM1P09493 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
TPM1P09493 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
TPM1P09493 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.17■■□□□ 1.78
TPM1P09493 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.17■■□□□ 1.78
TPM1P09493 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
TPM1P09493 AL359504.2-201ENST00000605506 1601 ntBASIC26.17■■□□□ 1.78
TPM1P09493 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC26.17■■□□□ 1.78
TPM1P09493 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
TPM1P09493 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
TPM1P09493 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
TPM1P09493 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
TPM1P09493 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
TPM1P09493 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
TPM1P09493 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
TPM1P09493 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
TPM1P09493 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
TPM1P09493 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
TPM1P09493 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
TPM1P09493 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
TPM1P09493 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
TPM1P09493 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
TPM1P09493 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
TPM1P09493 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC26.14■■□□□ 1.78
TPM1P09493 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
TPM1P09493 AC012676.1-201ENST00000574705 1949 ntBASIC26.14■■□□□ 1.77
TPM1P09493 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.13■■□□□ 1.77
TPM1P09493 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.13■■□□□ 1.77
TPM1P09493 CHST11-203ENST00000547956 936 ntTSL 2 BASIC26.13■■□□□ 1.77
TPM1P09493 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
TPM1P09493 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.13■■□□□ 1.77
TPM1P09493 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
TPM1P09493 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC26.13■■□□□ 1.77
TPM1P09493 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TPM1P09493 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TPM1P09493 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC26.12■■□□□ 1.77
TPM1P09493 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TPM1P09493 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TPM1P09493 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
TPM1P09493 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
TPM1P09493 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TPM1P09493 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC26.12■■□□□ 1.77
TPM1P09493 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TPM1P09493 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
TPM1P09493 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TPM1P09493 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
TPM1P09493 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
TPM1P09493 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
TPM1P09493 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
TPM1P09493 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
TPM1P09493 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms