Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RAF1P04049 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
RAF1P04049 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RAF1P04049 AC007029.1-201ENST00000604183 313 ntBASIC21.59■■□□□ 1.05
RAF1P04049 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RAF1P04049 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RAF1P04049 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RAF1P04049 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
RAF1P04049 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.58■■□□□ 1.05
RAF1P04049 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RAF1P04049 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAF1P04049 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAF1P04049 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAF1P04049 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RAF1P04049 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.57■■□□□ 1.04
RAF1P04049 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.57■■□□□ 1.04
RAF1P04049 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.57■■□□□ 1.04
RAF1P04049 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.57■■□□□ 1.04
RAF1P04049 AL157400.5-201ENST00000507624 621 ntBASIC21.57■■□□□ 1.04
RAF1P04049 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.57■■□□□ 1.04
RAF1P04049 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RAF1P04049 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.57■■□□□ 1.04
RAF1P04049 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RAF1P04049 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RAF1P04049 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RAF1P04049 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAF1P04049 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RAF1P04049 DUX4L18-201ENST00000553347 1267 ntBASIC21.56■■□□□ 1.04
RAF1P04049 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.56■■□□□ 1.04
RAF1P04049 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAF1P04049 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAF1P04049 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.56■■□□□ 1.04
RAF1P04049 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
RAF1P04049 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RAF1P04049 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
RAF1P04049 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RAF1P04049 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAF1P04049 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RAF1P04049 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
RAF1P04049 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RAF1P04049 AL592293.1-201ENST00000502889 1188 ntBASIC21.55■■□□□ 1.04
RAF1P04049 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAF1P04049 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RAF1P04049 AC133552.2-201ENST00000619106 1032 ntBASIC21.55■■□□□ 1.04
RAF1P04049 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
RAF1P04049 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RAF1P04049 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RAF1P04049 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
RAF1P04049 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RAF1P04049 AL035685.1-201ENST00000636663 812 ntBASIC21.54■■□□□ 1.04
RAF1P04049 AC142472.1-201ENST00000612013 1741 ntBASIC21.54■■□□□ 1.04
RAF1P04049 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RAF1P04049 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.54■■□□□ 1.04
RAF1P04049 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RAF1P04049 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
RAF1P04049 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RAF1P04049 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.53■■□□□ 1.04
RAF1P04049 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAF1P04049 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RAF1P04049 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAF1P04049 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.53■■□□□ 1.04
RAF1P04049 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.53■■□□□ 1.04
RAF1P04049 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RAF1P04049 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RAF1P04049 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.52■■□□□ 1.04
RAF1P04049 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.52■■□□□ 1.04
RAF1P04049 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RAF1P04049 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
RAF1P04049 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RAF1P04049 AC009831.1-201ENST00000580420 1582 ntBASIC21.52■■□□□ 1.04
RAF1P04049 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
RAF1P04049 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
RAF1P04049 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.51■■□□□ 1.03
RAF1P04049 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
RAF1P04049 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.51■■□□□ 1.03
RAF1P04049 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
RAF1P04049 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RAF1P04049 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
RAF1P04049 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RAF1P04049 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RAF1P04049 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
RAF1P04049 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
RAF1P04049 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.5■■□□□ 1.03
RAF1P04049 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RAF1P04049 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.5■■□□□ 1.03
RAF1P04049 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
RAF1P04049 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
RAF1P04049 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.5■■□□□ 1.03
RAF1P04049 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RAF1P04049 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RAF1P04049 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RAF1P04049 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.49■■□□□ 1.03
RAF1P04049 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RAF1P04049 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
RAF1P04049 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RAF1P04049 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RAF1P04049 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.49■■□□□ 1.03
RAF1P04049 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.49■■□□□ 1.03
RAF1P04049 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.49■■□□□ 1.03
RAF1P04049 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms