Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC32.02■■■□□ 2.72
MSH5O43196 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC32.01■■■□□ 2.72
MSH5O43196 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
MSH5O43196 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC32.01■■■□□ 2.71
MSH5O43196 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
MSH5O43196 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC32■■■□□ 2.71
MSH5O43196 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC32■■■□□ 2.71
MSH5O43196 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
MSH5O43196 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC32■■■□□ 2.71
MSH5O43196 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC32■■■□□ 2.71
MSH5O43196 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
MSH5O43196 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC32■■■□□ 2.71
MSH5O43196 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC32■■■□□ 2.71
MSH5O43196 AL356441.2-201ENST00000443009 864 ntBASIC32■■■□□ 2.71
MSH5O43196 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
MSH5O43196 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC32■■■□□ 2.71
MSH5O43196 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC32■■■□□ 2.71
MSH5O43196 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
MSH5O43196 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
MSH5O43196 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
MSH5O43196 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC31.99■■■□□ 2.71
MSH5O43196 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
MSH5O43196 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
MSH5O43196 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC31.98■■■□□ 2.71
MSH5O43196 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC31.98■■■□□ 2.71
MSH5O43196 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.98■■■□□ 2.71
MSH5O43196 AC018755.3-202ENST00000596210 929 ntBASIC31.98■■■□□ 2.71
MSH5O43196 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC31.98■■■□□ 2.71
MSH5O43196 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC31.97■■■□□ 2.71
MSH5O43196 AC020928.2-201ENST00000588717 2197 ntBASIC31.97■■■□□ 2.71
MSH5O43196 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
MSH5O43196 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
MSH5O43196 AC008686.1-203ENST00000591826 463 ntTSL 2 BASIC31.97■■■□□ 2.71
MSH5O43196 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC31.97■■■□□ 2.71
MSH5O43196 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
MSH5O43196 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
MSH5O43196 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC31.96■■■□□ 2.71
MSH5O43196 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC31.95■■■□□ 2.71
MSH5O43196 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
MSH5O43196 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC31.95■■■□□ 2.71
MSH5O43196 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
MSH5O43196 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC31.94■■■□□ 2.7
MSH5O43196 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
MSH5O43196 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
MSH5O43196 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC31.94■■■□□ 2.7
MSH5O43196 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC31.94■■■□□ 2.7
MSH5O43196 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
MSH5O43196 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC31.94■■■□□ 2.7
MSH5O43196 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
MSH5O43196 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
MSH5O43196 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC31.93■■■□□ 2.7
MSH5O43196 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC31.93■■■□□ 2.7
MSH5O43196 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC31.93■■■□□ 2.7
MSH5O43196 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
MSH5O43196 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC31.93■■■□□ 2.7
MSH5O43196 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
MSH5O43196 SHF-208ENST00000560734 1731 ntTSL 3 BASIC31.92■■■□□ 2.7
MSH5O43196 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
MSH5O43196 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC31.92■■■□□ 2.7
MSH5O43196 UBE2Q2P6-202ENST00000617217 443 ntTSL 5 BASIC31.92■■■□□ 2.7
MSH5O43196 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
MSH5O43196 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
MSH5O43196 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
MSH5O43196 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
MSH5O43196 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC31.91■■■□□ 2.7
MSH5O43196 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.91■■■□□ 2.7
MSH5O43196 MIR4508-201ENST00000584178 70 ntBASIC31.91■■■□□ 2.7
MSH5O43196 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC31.91■■■□□ 2.7
MSH5O43196 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
MSH5O43196 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC31.9■■■□□ 2.7
MSH5O43196 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
MSH5O43196 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.9■■■□□ 2.7
MSH5O43196 PRTG-204ENST00000561292 833 ntTSL 3 BASIC31.9■■■□□ 2.7
MSH5O43196 AL031848.2-201ENST00000607670 837 ntBASIC31.9■■■□□ 2.7
MSH5O43196 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC31.9■■■□□ 2.7
MSH5O43196 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
MSH5O43196 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
MSH5O43196 AKR1B10P2-201ENST00000577332 927 ntBASIC31.88■■■□□ 2.69
MSH5O43196 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC31.88■■■□□ 2.69
MSH5O43196 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
MSH5O43196 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
MSH5O43196 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
MSH5O43196 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
MSH5O43196 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC31.88■■■□□ 2.69
MSH5O43196 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC31.87■■■□□ 2.69
MSH5O43196 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
MSH5O43196 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC31.87■■■□□ 2.69
MSH5O43196 AC103724.3-201ENST00000564481 992 ntBASIC31.87■■■□□ 2.69
MSH5O43196 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
MSH5O43196 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
MSH5O43196 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC31.86■■■□□ 2.69
MSH5O43196 AL390728.6-201ENST00000566446 1246 ntBASIC31.86■■■□□ 2.69
MSH5O43196 AC008406.3-201ENST00000620001 1374 ntBASIC31.85■■■□□ 2.69
MSH5O43196 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
MSH5O43196 MIR3960-201ENST00000583311 91 ntBASIC31.85■■■□□ 2.69
MSH5O43196 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC31.85■■■□□ 2.69
MSH5O43196 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC31.85■■■□□ 2.69
MSH5O43196 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.85■■■□□ 2.69
MSH5O43196 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
MSH5O43196 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms