Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
SOX1O00570 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SOX1O00570 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.31■■□□□ 1.8
SOX1O00570 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SOX1O00570 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SOX1O00570 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC26.3■■□□□ 1.8
SOX1O00570 MTDHP2-201ENST00000601468 714 ntBASIC26.3■■□□□ 1.8
SOX1O00570 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.29■■□□□ 1.8
SOX1O00570 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SOX1O00570 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SOX1O00570 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SOX1O00570 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SOX1O00570 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
SOX1O00570 AC100797.4-201ENST00000631653 1827 ntBASIC26.28■■□□□ 1.8
SOX1O00570 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC26.28■■□□□ 1.8
SOX1O00570 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
SOX1O00570 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SOX1O00570 AK3-203ENST00000447596 705 ntTSL 2 BASIC26.27■■□□□ 1.8
SOX1O00570 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC26.27■■□□□ 1.8
SOX1O00570 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
SOX1O00570 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC26.26■■□□□ 1.79
SOX1O00570 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SOX1O00570 UNC93B3-201ENST00000308076 687 ntBASIC26.26■■□□□ 1.79
SOX1O00570 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC26.26■■□□□ 1.79
SOX1O00570 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
SOX1O00570 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.26■■□□□ 1.79
SOX1O00570 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.26■■□□□ 1.79
SOX1O00570 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
SOX1O00570 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SOX1O00570 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SOX1O00570 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SOX1O00570 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC26.24■■□□□ 1.79
SOX1O00570 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SOX1O00570 WHAMMP3-201ENST00000611636 1609 ntBASIC26.24■■□□□ 1.79
SOX1O00570 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
SOX1O00570 PLD4-205ENST00000553861 667 ntTSL 2 BASIC26.23■■□□□ 1.79
SOX1O00570 AL136162.1-201ENST00000607711 1078 ntBASIC26.23■■□□□ 1.79
SOX1O00570 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SOX1O00570 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SOX1O00570 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.22■■□□□ 1.79
SOX1O00570 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SOX1O00570 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC26.21■■□□□ 1.79
SOX1O00570 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC26.21■■□□□ 1.79
SOX1O00570 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.21■■□□□ 1.79
SOX1O00570 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC26.21■■□□□ 1.79
SOX1O00570 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SOX1O00570 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC26.2■■□□□ 1.78
SOX1O00570 EXOG-217ENST00000630638 197 ntTSL 5 BASIC26.2■■□□□ 1.78
SOX1O00570 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SOX1O00570 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
SOX1O00570 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.2■■□□□ 1.78
SOX1O00570 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SOX1O00570 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.19■■□□□ 1.78
SOX1O00570 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SOX1O00570 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
SOX1O00570 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
SOX1O00570 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC26.19■■□□□ 1.78
SOX1O00570 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC26.19■■□□□ 1.78
SOX1O00570 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.19■■□□□ 1.78
SOX1O00570 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SOX1O00570 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SOX1O00570 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.18■■□□□ 1.78
SOX1O00570 EDA-201ENST00000338901 1233 ntBASIC26.17■■□□□ 1.78
SOX1O00570 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SOX1O00570 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC26.17■■□□□ 1.78
SOX1O00570 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC26.17■■□□□ 1.78
SOX1O00570 AL355001.2-201ENST00000620617 1191 ntBASIC26.17■■□□□ 1.78
SOX1O00570 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26.16■■□□□ 1.78
SOX1O00570 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC26.16■■□□□ 1.78
SOX1O00570 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.15■■□□□ 1.78
SOX1O00570 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SOX1O00570 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
SOX1O00570 RBM38-205ENST00000440234 686 ntTSL 2 BASIC26.15■■□□□ 1.78
SOX1O00570 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC26.15■■□□□ 1.78
SOX1O00570 STOX2-205ENST00000513034 807 ntTSL 3 BASIC26.15■■□□□ 1.78
SOX1O00570 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC26.15■■□□□ 1.78
SOX1O00570 MIR4281-201ENST00000580852 62 ntBASIC26.15■■□□□ 1.78
SOX1O00570 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SOX1O00570 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
SOX1O00570 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SOX1O00570 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC26.14■■□□□ 1.78
SOX1O00570 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SOX1O00570 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SOX1O00570 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC26.14■■□□□ 1.78
SOX1O00570 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SOX1O00570 DENND3-207ENST00000518347 850 ntTSL 2 BASIC26.14■■□□□ 1.78
SOX1O00570 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SOX1O00570 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.14■■□□□ 1.77
SOX1O00570 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
SOX1O00570 AL136967.2-201ENST00000623968 743 ntBASIC26.13■■□□□ 1.77
SOX1O00570 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC26.12■■□□□ 1.77
SOX1O00570 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC26.12■■□□□ 1.77
SOX1O00570 AC024257.2-201ENST00000549699 147 ntBASIC26.12■■□□□ 1.77
SOX1O00570 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
SOX1O00570 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
SOX1O00570 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
SOX1O00570 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC26.11■■□□□ 1.77
SOX1O00570 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SOX1O00570 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SOX1O00570 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms