Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AF213884.3-201ENST00000563833 479 ntBASIC23.42■■□□□ 1.34
CACNA1AO00555 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.42■■□□□ 1.34
CACNA1AO00555 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.41■■□□□ 1.34
CACNA1AO00555 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC23.41■■□□□ 1.34
CACNA1AO00555 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
CACNA1AO00555 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.41■■□□□ 1.34
CACNA1AO00555 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CACNA1AO00555 MIR4281-201ENST00000580852 62 ntBASIC23.41■■□□□ 1.34
CACNA1AO00555 MTDHP2-201ENST00000601468 714 ntBASIC23.41■■□□□ 1.34
CACNA1AO00555 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CACNA1AO00555 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CACNA1AO00555 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
CACNA1AO00555 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
CACNA1AO00555 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
CACNA1AO00555 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
CACNA1AO00555 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.34
CACNA1AO00555 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
CACNA1AO00555 AC024257.2-201ENST00000549699 147 ntBASIC23.39■■□□□ 1.34
CACNA1AO00555 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.39■■□□□ 1.33
CACNA1AO00555 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.39■■□□□ 1.33
CACNA1AO00555 AC066615.1-201ENST00000640911 628 ntBASIC23.39■■□□□ 1.33
CACNA1AO00555 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
CACNA1AO00555 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1AO00555 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1AO00555 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1AO00555 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC23.38■■□□□ 1.33
CACNA1AO00555 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.38■■□□□ 1.33
CACNA1AO00555 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1AO00555 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
CACNA1AO00555 IKBKGP1-201ENST00000612193 1073 ntBASIC23.38■■□□□ 1.33
CACNA1AO00555 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC23.38■■□□□ 1.33
CACNA1AO00555 AC120024.1-201ENST00000562672 995 ntBASIC23.37■■□□□ 1.33
CACNA1AO00555 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CACNA1AO00555 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC23.37■■□□□ 1.33
CACNA1AO00555 AL136967.2-201ENST00000623968 743 ntBASIC23.37■■□□□ 1.33
CACNA1AO00555 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.37■■□□□ 1.33
CACNA1AO00555 UNC93B3-201ENST00000308076 687 ntBASIC23.36■■□□□ 1.33
CACNA1AO00555 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
CACNA1AO00555 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.36■■□□□ 1.33
CACNA1AO00555 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CACNA1AO00555 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1AO00555 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1AO00555 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1AO00555 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1AO00555 AL136162.1-201ENST00000607711 1078 ntBASIC23.35■■□□□ 1.33
CACNA1AO00555 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.35■■□□□ 1.33
CACNA1AO00555 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.35■■□□□ 1.33
CACNA1AO00555 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1AO00555 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC23.35■■□□□ 1.33
CACNA1AO00555 AC022517.1-201ENST00000592429 346 ntBASIC23.34■■□□□ 1.33
CACNA1AO00555 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CACNA1AO00555 AC092437.1-201ENST00000624794 1048 ntBASIC23.34■■□□□ 1.33
CACNA1AO00555 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CACNA1AO00555 AP001330.3-201ENST00000520123 633 ntBASIC23.34■■□□□ 1.33
CACNA1AO00555 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CACNA1AO00555 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CACNA1AO00555 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.33■■□□□ 1.33
CACNA1AO00555 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CACNA1AO00555 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CACNA1AO00555 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CACNA1AO00555 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.32■■□□□ 1.32
CACNA1AO00555 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC23.32■■□□□ 1.32
CACNA1AO00555 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CACNA1AO00555 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CACNA1AO00555 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CACNA1AO00555 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CACNA1AO00555 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CACNA1AO00555 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CACNA1AO00555 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CACNA1AO00555 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.31■■□□□ 1.32
CACNA1AO00555 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.31■■□□□ 1.32
CACNA1AO00555 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
CACNA1AO00555 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CACNA1AO00555 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.31■■□□□ 1.32
CACNA1AO00555 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CACNA1AO00555 ABHD17AP1-201ENST00000358206 933 ntBASIC23.3■■□□□ 1.32
CACNA1AO00555 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC23.3■■□□□ 1.32
CACNA1AO00555 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CACNA1AO00555 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
CACNA1AO00555 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.3■■□□□ 1.32
CACNA1AO00555 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1AO00555 AC091305.1-201ENST00000479476 895 ntBASIC23.29■■□□□ 1.32
CACNA1AO00555 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.29■■□□□ 1.32
CACNA1AO00555 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1AO00555 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1AO00555 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1AO00555 CBFB-203ENST00000561924 584 ntTSL 5 BASIC23.29■■□□□ 1.32
CACNA1AO00555 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
CACNA1AO00555 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC23.28■■□□□ 1.32
CACNA1AO00555 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CACNA1AO00555 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.28■■□□□ 1.32
CACNA1AO00555 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
CACNA1AO00555 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.27■■□□□ 1.32
CACNA1AO00555 AC034268.1-201ENST00000441047 882 ntBASIC23.27■■□□□ 1.32
CACNA1AO00555 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.27■■□□□ 1.32
CACNA1AO00555 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.27■■□□□ 1.32
CACNA1AO00555 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC23.27■■□□□ 1.32
CACNA1AO00555 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CACNA1AO00555 AK3-203ENST00000447596 705 ntTSL 2 BASIC23.27■■□□□ 1.32
CACNA1AO00555 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms