Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMKR1H3BMG3 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMKR1H3BMG3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMKR1H3BMG3 AC005559.1-201ENST00000589661 871 ntBASIC17.46■□□□□ 0.39
SMKR1H3BMG3 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SMKR1H3BMG3 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SMKR1H3BMG3 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 PEX7-203ENST00000541292 945 ntTSL 5 BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMKR1H3BMG3 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
SMKR1H3BMG3 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMKR1H3BMG3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SMKR1H3BMG3 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMKR1H3BMG3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMKR1H3BMG3 CALM3-209ENST00000597743 577 ntTSL 4 BASIC17.44■□□□□ 0.38
SMKR1H3BMG3 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMKR1H3BMG3 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SMKR1H3BMG3 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMKR1H3BMG3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC17.44■□□□□ 0.38
SMKR1H3BMG3 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
SMKR1H3BMG3 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
SMKR1H3BMG3 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMKR1H3BMG3 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMKR1H3BMG3 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SMKR1H3BMG3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC17.43■□□□□ 0.38
SMKR1H3BMG3 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SMKR1H3BMG3 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SMKR1H3BMG3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.43■□□□□ 0.38
SMKR1H3BMG3 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMKR1H3BMG3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMKR1H3BMG3 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC17.41■□□□□ 0.38
SMKR1H3BMG3 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC17.41■□□□□ 0.38
SMKR1H3BMG3 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMKR1H3BMG3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SMKR1H3BMG3 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC17.41■□□□□ 0.38
SMKR1H3BMG3 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMKR1H3BMG3 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMKR1H3BMG3 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC17.4■□□□□ 0.38
SMKR1H3BMG3 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMKR1H3BMG3 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC17.4■□□□□ 0.38
SMKR1H3BMG3 AC097639.1-201ENST00000565519 1891 ntBASIC17.4■□□□□ 0.38
SMKR1H3BMG3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMKR1H3BMG3 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMKR1H3BMG3 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC17.4■□□□□ 0.38
SMKR1H3BMG3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC17.4■□□□□ 0.38
SMKR1H3BMG3 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMKR1H3BMG3 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMKR1H3BMG3 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMKR1H3BMG3 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMKR1H3BMG3 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMKR1H3BMG3 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMKR1H3BMG3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMKR1H3BMG3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMKR1H3BMG3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMKR1H3BMG3 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC17.39■□□□□ 0.37
SMKR1H3BMG3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMKR1H3BMG3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMKR1H3BMG3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC17.39■□□□□ 0.37
SMKR1H3BMG3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SMKR1H3BMG3 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SMKR1H3BMG3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMKR1H3BMG3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMKR1H3BMG3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMKR1H3BMG3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.38■□□□□ 0.37
SMKR1H3BMG3 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMKR1H3BMG3 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMKR1H3BMG3 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMKR1H3BMG3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms