Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 BX005266.1-201ENST00000473402 457 ntBASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 AC120057.1-201ENST00000483947 663 ntBASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
PCDHGA11Q9Y5H2 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 AL603756.1-201ENST00000606511 2163 ntBASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 TUBB8P12-201ENST00000308911 1335 ntBASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 TUBB7P-202ENST00000428444 1305 ntBASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 TUBB8P7-204ENST00000567960 1332 ntBASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 AL353135.1-201ENST00000606729 504 ntBASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 AL589182.2-201ENST00000619332 1049 ntBASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 REXO1L6P-202ENST00000619970 1078 ntBASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCDHGA11Q9Y5H2 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 SCARNA2-201ENST00000458748 420 ntBASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 AC008608.2-201ENST00000606089 416 ntBASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCDHGA11Q9Y5H2 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms