Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.97■□□□□ 0.31
TM9SF3Q9HD45 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 AC002056.1-201ENST00000395613 760 ntBASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 HLA-J-203ENST00000494367 1087 ntBASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TM9SF3Q9HD45 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
TM9SF3Q9HD45 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TM9SF3Q9HD45 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TM9SF3Q9HD45 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
TM9SF3Q9HD45 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TM9SF3Q9HD45 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TM9SF3Q9HD45 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
TM9SF3Q9HD45 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 ADH5P3-201ENST00000433842 1137 ntBASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 AC023141.5-201ENST00000458585 616 ntBASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 AC025678.2-201ENST00000562061 970 ntBASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 AC093512.1-201ENST00000617969 520 ntBASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 AL023806.1-201ENST00000603994 1649 ntBASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
TM9SF3Q9HD45 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 TIMM8BP1-201ENST00000452384 211 ntBASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 AC109322.1-201ENST00000524499 1264 ntBASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 SPCS2P1-201ENST00000561636 679 ntBASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms