Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS11Q9H270 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS11Q9H270 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS11Q9H270 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS11Q9H270 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS11Q9H270 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS11Q9H270 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS11Q9H270 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VPS11Q9H270 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS11Q9H270 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS11Q9H270 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS11Q9H270 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VPS11Q9H270 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS11Q9H270 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS11Q9H270 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS11Q9H270 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
VPS11Q9H270 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS11Q9H270 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS11Q9H270 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS11Q9H270 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
VPS11Q9H270 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS11Q9H270 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 AL596257.1-201ENST00000641463 2694 ntBASIC17.11■□□□□ 0.33
VPS11Q9H270 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS11Q9H270 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS11Q9H270 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VPS11Q9H270 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS11Q9H270 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS11Q9H270 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS11Q9H270 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS11Q9H270 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
VPS11Q9H270 DUX4L26-201ENST00000489078 1255 ntBASIC17.11■□□□□ 0.33
VPS11Q9H270 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
VPS11Q9H270 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS11Q9H270 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS11Q9H270 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS11Q9H270 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS11Q9H270 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 HLA-A-202ENST00000376806 1854 ntBASIC17.11■□□□□ 0.33
VPS11Q9H270 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VPS11Q9H270 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 FRMD8P1-201ENST00000440433 1524 ntBASIC17.11■□□□□ 0.33
VPS11Q9H270 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS11Q9H270 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS11Q9H270 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.1■□□□□ 0.33
VPS11Q9H270 AC091607.1-201ENST00000490318 1060 ntBASIC17.1■□□□□ 0.33
VPS11Q9H270 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.1■□□□□ 0.33
VPS11Q9H270 AP002490.2-201ENST00000524791 560 ntBASIC17.1■□□□□ 0.33
VPS11Q9H270 AC009533.2-201ENST00000543664 586 ntBASIC17.1■□□□□ 0.33
VPS11Q9H270 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.1■□□□□ 0.33
VPS11Q9H270 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
VPS11Q9H270 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
VPS11Q9H270 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS11Q9H270 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS11Q9H270 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS11Q9H270 GPR89P-201ENST00000407924 1495 ntBASIC17.1■□□□□ 0.33
VPS11Q9H270 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS11Q9H270 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
VPS11Q9H270 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS11Q9H270 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
VPS11Q9H270 AC132938.5-201ENST00000624980 1813 ntBASIC17.1■□□□□ 0.33
VPS11Q9H270 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VPS11Q9H270 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VPS11Q9H270 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms