Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL12A1Q99715 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.63□□□□□ -0.07
COL12A1Q99715 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC14.63□□□□□ -0.07
COL12A1Q99715 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL12A1Q99715 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL12A1Q99715 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC14.63□□□□□ -0.07
COL12A1Q99715 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.63□□□□□ -0.07
COL12A1Q99715 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.63□□□□□ -0.07
COL12A1Q99715 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL12A1Q99715 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
COL12A1Q99715 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
COL12A1Q99715 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL12A1Q99715 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
COL12A1Q99715 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC14.63□□□□□ -0.07
COL12A1Q99715 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
COL12A1Q99715 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL12A1Q99715 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL12A1Q99715 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.63□□□□□ -0.07
COL12A1Q99715 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.63□□□□□ -0.07
COL12A1Q99715 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.63□□□□□ -0.07
COL12A1Q99715 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.63□□□□□ -0.07
COL12A1Q99715 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
COL12A1Q99715 AC128714.1-201ENST00000637035 887 ntBASIC14.63□□□□□ -0.07
COL12A1Q99715 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL12A1Q99715 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.63□□□□□ -0.07
COL12A1Q99715 AC087289.5-201ENST00000586076 3175 ntBASIC14.63□□□□□ -0.07
COL12A1Q99715 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC14.63□□□□□ -0.07
COL12A1Q99715 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
COL12A1Q99715 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL12A1Q99715 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
COL12A1Q99715 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL12A1Q99715 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.62□□□□□ -0.07
COL12A1Q99715 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL12A1Q99715 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL12A1Q99715 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.62□□□□□ -0.07
COL12A1Q99715 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL12A1Q99715 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC14.62□□□□□ -0.07
COL12A1Q99715 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.62□□□□□ -0.07
COL12A1Q99715 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
COL12A1Q99715 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL12A1Q99715 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.62□□□□□ -0.07
COL12A1Q99715 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.62□□□□□ -0.07
COL12A1Q99715 AL033527.5-201ENST00000641382 801 ntBASIC14.62□□□□□ -0.07
COL12A1Q99715 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL12A1Q99715 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC14.62□□□□□ -0.07
COL12A1Q99715 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
COL12A1Q99715 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL12A1Q99715 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL12A1Q99715 MIR5572-201ENST00000583188 137 ntBASIC14.62□□□□□ -0.07
COL12A1Q99715 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC14.62□□□□□ -0.07
COL12A1Q99715 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL12A1Q99715 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.62□□□□□ -0.07
COL12A1Q99715 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL12A1Q99715 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC14.62□□□□□ -0.07
COL12A1Q99715 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC14.62□□□□□ -0.07
COL12A1Q99715 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL12A1Q99715 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
COL12A1Q99715 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC14.62□□□□□ -0.07
COL12A1Q99715 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC14.62□□□□□ -0.07
COL12A1Q99715 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC14.62□□□□□ -0.07
COL12A1Q99715 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL12A1Q99715 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.62□□□□□ -0.07
COL12A1Q99715 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.62□□□□□ -0.07
COL12A1Q99715 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL12A1Q99715 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.61□□□□□ -0.07
COL12A1Q99715 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL12A1Q99715 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC14.61□□□□□ -0.07
COL12A1Q99715 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL12A1Q99715 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
COL12A1Q99715 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 RPL13AP20-201ENST00000459725 609 ntBASIC14.61□□□□□ -0.07
COL12A1Q99715 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC14.61□□□□□ -0.07
COL12A1Q99715 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
COL12A1Q99715 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL12A1Q99715 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.61□□□□□ -0.07
COL12A1Q99715 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.61□□□□□ -0.07
COL12A1Q99715 RPL17P11-201ENST00000417593 544 ntBASIC14.61□□□□□ -0.07
COL12A1Q99715 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.61□□□□□ -0.07
COL12A1Q99715 AC007969.1-201ENST00000433675 447 ntBASIC14.61□□□□□ -0.07
COL12A1Q99715 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.61□□□□□ -0.07
COL12A1Q99715 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 AL031055.1-201ENST00000606362 631 ntBASIC14.61□□□□□ -0.07
COL12A1Q99715 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC14.61□□□□□ -0.07
COL12A1Q99715 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC14.61□□□□□ -0.07
COL12A1Q99715 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC14.61□□□□□ -0.07
COL12A1Q99715 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL12A1Q99715 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms