Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.19■□□□□ 0.34
CHFRQ96EP1 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.19■□□□□ 0.34
CHFRQ96EP1 AC016027.1-202ENST00000607927 1699 ntBASIC17.19■□□□□ 0.34
CHFRQ96EP1 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CHFRQ96EP1 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CHFRQ96EP1 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CHFRQ96EP1 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.19■□□□□ 0.34
CHFRQ96EP1 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 AC093525.9-201ENST00000624961 1746 ntBASIC17.18■□□□□ 0.34
CHFRQ96EP1 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 AC015922.1-201ENST00000421102 1152 ntBASIC17.18■□□□□ 0.34
CHFRQ96EP1 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 AC097493.3-201ENST00000509725 367 ntBASIC17.18■□□□□ 0.34
CHFRQ96EP1 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 ALG1L8P-201ENST00000533887 760 ntBASIC17.18■□□□□ 0.34
CHFRQ96EP1 MPDU1-223ENST00000582151 728 ntBASIC17.18■□□□□ 0.34
CHFRQ96EP1 AC027307.2-201ENST00000591252 911 ntBASIC17.18■□□□□ 0.34
CHFRQ96EP1 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 AL390754.1-201ENST00000619088 582 ntBASIC17.18■□□□□ 0.34
CHFRQ96EP1 AF228730.6-201ENST00000641497 218 ntBASIC17.18■□□□□ 0.34
CHFRQ96EP1 AC084121.3-201ENST00000641716 218 ntBASIC17.18■□□□□ 0.34
CHFRQ96EP1 AC105233.6-201ENST00000642093 218 ntBASIC17.18■□□□□ 0.34
CHFRQ96EP1 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.18■□□□□ 0.34
CHFRQ96EP1 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHFRQ96EP1 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 TSPY16P-201ENST00000449843 468 ntBASIC17.17■□□□□ 0.34
CHFRQ96EP1 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 IGHV3-42-201ENST00000520410 361 ntBASIC17.17■□□□□ 0.34
CHFRQ96EP1 AC087641.1-201ENST00000557561 1021 ntBASIC17.17■□□□□ 0.34
CHFRQ96EP1 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.17■□□□□ 0.34
CHFRQ96EP1 MIR6080-201ENST00000617359 66 ntBASIC17.17■□□□□ 0.34
CHFRQ96EP1 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CHFRQ96EP1 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CHFRQ96EP1 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CHFRQ96EP1 FRMD8P1-201ENST00000440433 1524 ntBASIC17.16■□□□□ 0.34
CHFRQ96EP1 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CHFRQ96EP1 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CHFRQ96EP1 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHFRQ96EP1 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHFRQ96EP1 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHFRQ96EP1 NOC2LP2-201ENST00000407594 1944 ntBASIC17.16■□□□□ 0.34
CHFRQ96EP1 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.16■□□□□ 0.34
CHFRQ96EP1 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHFRQ96EP1 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHFRQ96EP1 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.16■□□□□ 0.34
CHFRQ96EP1 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.16■□□□□ 0.34
CHFRQ96EP1 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms