Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CFL1-202ENST00000524553 860 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 AC006557.2-201ENST00000592985 1240 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 MTDHP4-201ENST00000600287 670 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PMP22-202ENST00000395936 816 ntTSL 3 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 MED29-202ENST00000594368 1471 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 NEK7-201ENST00000367383 586 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SPDYE21P-201ENST00000413323 827 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CROCCP1-201ENST00000426910 5675 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 IGLL3P-201ENST00000412472 434 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 DUTP2-201ENST00000519164 463 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 AC105339.1-204ENST00000636249 355 ntBASIC5.27□□□□□ -1.57
SYNE1Q8NF91 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 COMP-202ENST00000425807 2292 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 UBALD1-205ENST00000590891 2641 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms