Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SYNE3Q6ZMZ3 AP002414.3-201ENST00000589352 1468 ntBASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 AC092068.3-201ENST00000587894 2016 ntBASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 AC009078.2-202ENST00000463353 338 ntBASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 SLC25A6P4-201ENST00000586535 553 ntBASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 GGTLC5P-201ENST00000617623 998 ntBASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SYNE3Q6ZMZ3 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 AL021920.2-201ENST00000624828 1351 ntBASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 AC092910.1-201ENST00000482027 1129 ntBASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SYNE3Q6ZMZ3 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 AC099398.1-201ENST00000567919 2776 ntBASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SYNE3Q6ZMZ3 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms