Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.5■□□□□ 0.23
HNF4AP41235 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
HNF4AP41235 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.5■□□□□ 0.23
HNF4AP41235 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.5■□□□□ 0.23
HNF4AP41235 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.5■□□□□ 0.23
HNF4AP41235 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.5■□□□□ 0.23
HNF4AP41235 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.5■□□□□ 0.23
HNF4AP41235 AP002490.2-201ENST00000524791 560 ntBASIC16.5■□□□□ 0.23
HNF4AP41235 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.5■□□□□ 0.23
HNF4AP41235 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.5■□□□□ 0.23
HNF4AP41235 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.5■□□□□ 0.23
HNF4AP41235 AL589182.2-201ENST00000619332 1049 ntBASIC16.5■□□□□ 0.23
HNF4AP41235 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
HNF4AP41235 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
HNF4AP41235 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.5■□□□□ 0.23
HNF4AP41235 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.5■□□□□ 0.23
HNF4AP41235 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
HNF4AP41235 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HNF4AP41235 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
HNF4AP41235 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.5■□□□□ 0.23
HNF4AP41235 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.5■□□□□ 0.23
HNF4AP41235 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HNF4AP41235 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.49■□□□□ 0.23
HNF4AP41235 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.49■□□□□ 0.23
HNF4AP41235 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 AP002414.1-201ENST00000391405 1147 ntBASIC16.49■□□□□ 0.23
HNF4AP41235 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.49■□□□□ 0.23
HNF4AP41235 TPM4P1-201ENST00000436100 807 ntBASIC16.49■□□□□ 0.23
HNF4AP41235 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.49■□□□□ 0.23
HNF4AP41235 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.49■□□□□ 0.23
HNF4AP41235 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.49■□□□□ 0.23
HNF4AP41235 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
HNF4AP41235 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.49■□□□□ 0.23
HNF4AP41235 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.49■□□□□ 0.23
HNF4AP41235 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
HNF4AP41235 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HNF4AP41235 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HNF4AP41235 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 AL590787.1-201ENST00000568856 1315 ntBASIC16.48■□□□□ 0.23
HNF4AP41235 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.48■□□□□ 0.23
HNF4AP41235 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 RPS2P1-201ENST00000434010 821 ntBASIC16.48■□□□□ 0.23
HNF4AP41235 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.48■□□□□ 0.23
HNF4AP41235 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 RNPS1P1-201ENST00000507437 918 ntBASIC16.48■□□□□ 0.23
HNF4AP41235 AC073648.2-201ENST00000510116 352 ntBASIC16.48■□□□□ 0.23
HNF4AP41235 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.48■□□□□ 0.23
HNF4AP41235 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.48■□□□□ 0.23
HNF4AP41235 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HNF4AP41235 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
HNF4AP41235 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.48■□□□□ 0.23
HNF4AP41235 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.48■□□□□ 0.23
HNF4AP41235 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.48■□□□□ 0.23
HNF4AP41235 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HNF4AP41235 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.47■□□□□ 0.23
HNF4AP41235 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.47■□□□□ 0.23
HNF4AP41235 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.47■□□□□ 0.23
HNF4AP41235 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HNF4AP41235 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms