Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DOAP06340 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DOAP06340 AC068880.1-201ENST00000507289 2297 ntBASIC19.92■□□□□ 0.78
HLA-DOAP06340 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DOAP06340 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DOAP06340 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 MIR770-201ENST00000390219 98 ntBASIC19.91■□□□□ 0.78
HLA-DOAP06340 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 KRT8P23-201ENST00000560090 1207 ntBASIC19.91■□□□□ 0.78
HLA-DOAP06340 CYP2A7P1-201ENST00000595391 815 ntBASIC19.91■□□□□ 0.78
HLA-DOAP06340 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DOAP06340 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.91■□□□□ 0.78
HLA-DOAP06340 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DOAP06340 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DOAP06340 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DOAP06340 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DOAP06340 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 AC093512.1-201ENST00000617969 520 ntBASIC19.9■□□□□ 0.78
HLA-DOAP06340 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DOAP06340 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DOAP06340 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DOAP06340 UXT-AS1-201ENST00000590504 1525 ntBASIC19.9■□□□□ 0.78
HLA-DOAP06340 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DOAP06340 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DOAP06340 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DOAP06340 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.9■□□□□ 0.78
HLA-DOAP06340 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HLA-DOAP06340 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.78
HLA-DOAP06340 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
HLA-DOAP06340 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
HLA-DOAP06340 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
HLA-DOAP06340 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
HLA-DOAP06340 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HLA-DOAP06340 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 TUBB8P12-201ENST00000308911 1335 ntBASIC19.89■□□□□ 0.77
HLA-DOAP06340 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HLA-DOAP06340 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HLA-DOAP06340 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HLA-DOAP06340 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HLA-DOAP06340 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HLA-DOAP06340 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 TUBB7P-202ENST00000428444 1305 ntBASIC19.89■□□□□ 0.77
HLA-DOAP06340 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 TUBB8P7-204ENST00000567960 1332 ntBASIC19.89■□□□□ 0.77
HLA-DOAP06340 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
HLA-DOAP06340 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HLA-DOAP06340 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms