Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MT-ND1P03886 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MT-ND1P03886 AC005052.1-201ENST00000625181 2492 ntBASIC16.08■□□□□ 0.16
MT-ND1P03886 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
MT-ND1P03886 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
MT-ND1P03886 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
MT-ND1P03886 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MT-ND1P03886 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
MT-ND1P03886 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.08■□□□□ 0.16
MT-ND1P03886 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MT-ND1P03886 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
MT-ND1P03886 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
MT-ND1P03886 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.07■□□□□ 0.16
MT-ND1P03886 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.07■□□□□ 0.16
MT-ND1P03886 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.07■□□□□ 0.16
MT-ND1P03886 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
MT-ND1P03886 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.07■□□□□ 0.16
MT-ND1P03886 AC211429.1-201ENST00000415277 523 ntBASIC16.07■□□□□ 0.16
MT-ND1P03886 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.07■□□□□ 0.16
MT-ND1P03886 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.07■□□□□ 0.16
MT-ND1P03886 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.07■□□□□ 0.16
MT-ND1P03886 AC005332.3-201ENST00000589904 676 ntBASIC16.07■□□□□ 0.16
MT-ND1P03886 LINC01023-201ENST00000606054 436 ntBASIC16.07■□□□□ 0.16
MT-ND1P03886 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.07■□□□□ 0.16
MT-ND1P03886 HYMAI.1-201ENST00000620949 238 ntBASIC16.07■□□□□ 0.16
MT-ND1P03886 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.07■□□□□ 0.16
MT-ND1P03886 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.07■□□□□ 0.16
MT-ND1P03886 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
MT-ND1P03886 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 AL391256.1-201ENST00000443260 1855 ntBASIC16.07■□□□□ 0.16
MT-ND1P03886 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.07■□□□□ 0.16
MT-ND1P03886 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.07■□□□□ 0.16
MT-ND1P03886 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MT-ND1P03886 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
MT-ND1P03886 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
MT-ND1P03886 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
MT-ND1P03886 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 AL645728.1-201ENST00000366221 2101 ntBASIC16.06■□□□□ 0.16
MT-ND1P03886 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.06■□□□□ 0.16
MT-ND1P03886 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.06■□□□□ 0.16
MT-ND1P03886 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.06■□□□□ 0.16
MT-ND1P03886 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.06■□□□□ 0.16
MT-ND1P03886 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.06■□□□□ 0.16
MT-ND1P03886 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.06■□□□□ 0.16
MT-ND1P03886 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
MT-ND1P03886 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.06■□□□□ 0.16
MT-ND1P03886 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.06■□□□□ 0.16
MT-ND1P03886 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.06■□□□□ 0.16
MT-ND1P03886 AC092647.4-201ENST00000457211 535 ntBASIC16.06■□□□□ 0.16
MT-ND1P03886 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.06■□□□□ 0.16
MT-ND1P03886 IGHV3-52-201ENST00000519770 353 ntBASIC16.06■□□□□ 0.16
MT-ND1P03886 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 VENTXP5-201ENST00000523979 775 ntBASIC16.06■□□□□ 0.16
MT-ND1P03886 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.06■□□□□ 0.16
MT-ND1P03886 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.06■□□□□ 0.16
MT-ND1P03886 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MT-ND1P03886 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
MT-ND1P03886 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
MT-ND1P03886 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MT-ND1P03886 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MT-ND1P03886 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.05■□□□□ 0.16
MT-ND1P03886 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.05■□□□□ 0.16
MT-ND1P03886 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MT-ND1P03886 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MT-ND1P03886 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MT-ND1P03886 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
MT-ND1P03886 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
MT-ND1P03886 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.05■□□□□ 0.16
MT-ND1P03886 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms