Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC7.46□□□□□ -1.22
USH2AO75445 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 RPS3-201ENST00000278572 907 ntTSL 3 BASIC7.46□□□□□ -1.22
USH2AO75445 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC7.46□□□□□ -1.22
USH2AO75445 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC7.46□□□□□ -1.22
USH2AO75445 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC7.46□□□□□ -1.22
USH2AO75445 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC7.46□□□□□ -1.22
USH2AO75445 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC7.46□□□□□ -1.22
USH2AO75445 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC7.46□□□□□ -1.22
USH2AO75445 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
USH2AO75445 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC7.46□□□□□ -1.22
USH2AO75445 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC7.46□□□□□ -1.22
USH2AO75445 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC7.46□□□□□ -1.22
USH2AO75445 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC7.46□□□□□ -1.22
USH2AO75445 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC7.46□□□□□ -1.22
USH2AO75445 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC7.46□□□□□ -1.22
USH2AO75445 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
USH2AO75445 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC7.45□□□□□ -1.22
USH2AO75445 AC046185.3-201ENST00000623228 1824 ntBASIC7.45□□□□□ -1.22
USH2AO75445 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 BX276092.7-203ENST00000637198 1536 ntBASIC7.45□□□□□ -1.22
USH2AO75445 RPS19-201ENST00000221975 500 ntTSL 3 BASIC7.45□□□□□ -1.22
USH2AO75445 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 LBX2-201ENST00000341396 886 ntTSL 3 BASIC7.45□□□□□ -1.22
USH2AO75445 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC7.45□□□□□ -1.22
USH2AO75445 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC7.45□□□□□ -1.22
USH2AO75445 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC7.45□□□□□ -1.22
USH2AO75445 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC7.45□□□□□ -1.22
USH2AO75445 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
USH2AO75445 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC7.45□□□□□ -1.22
USH2AO75445 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC7.45□□□□□ -1.22
USH2AO75445 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 PFN1P12-201ENST00000455938 534 ntBASIC7.45□□□□□ -1.22
USH2AO75445 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC7.45□□□□□ -1.22
USH2AO75445 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC7.45□□□□□ -1.22
USH2AO75445 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC7.45□□□□□ -1.22
USH2AO75445 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC7.45□□□□□ -1.22
USH2AO75445 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC7.45□□□□□ -1.22
USH2AO75445 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
USH2AO75445 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
USH2AO75445 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 AC005077.2-201ENST00000449786 690 ntBASIC7.45□□□□□ -1.22
USH2AO75445 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC7.45□□□□□ -1.22
USH2AO75445 SDHAP3-202ENST00000515467 728 ntBASIC7.45□□□□□ -1.22
USH2AO75445 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC7.45□□□□□ -1.22
USH2AO75445 AC092337.1-201ENST00000568699 1129 ntBASIC7.45□□□□□ -1.22
USH2AO75445 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC7.45□□□□□ -1.22
USH2AO75445 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC7.45□□□□□ -1.22
USH2AO75445 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC7.45□□□□□ -1.22
USH2AO75445 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms