Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
PROM1O43490 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
PROM1O43490 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PROM1O43490 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
PROM1O43490 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.14■□□□□ 0.18
PROM1O43490 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
PROM1O43490 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
PROM1O43490 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
PROM1O43490 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.14■□□□□ 0.17
PROM1O43490 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.14■□□□□ 0.17
PROM1O43490 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PROM1O43490 ELK2BP-201ENST00000415014 1224 ntBASIC16.14■□□□□ 0.17
PROM1O43490 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.14■□□□□ 0.17
PROM1O43490 PAWRP1-201ENST00000451083 565 ntBASIC16.14■□□□□ 0.17
PROM1O43490 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.14■□□□□ 0.17
PROM1O43490 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.14■□□□□ 0.17
PROM1O43490 DUX4L17-201ENST00000557360 1267 ntBASIC16.14■□□□□ 0.17
PROM1O43490 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.14■□□□□ 0.17
PROM1O43490 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.14■□□□□ 0.17
PROM1O43490 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.14■□□□□ 0.17
PROM1O43490 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PROM1O43490 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.14■□□□□ 0.17
PROM1O43490 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 AC105020.1-201ENST00000435356 2205 ntBASIC16.14■□□□□ 0.17
PROM1O43490 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PROM1O43490 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.13■□□□□ 0.17
PROM1O43490 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.13■□□□□ 0.17
PROM1O43490 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
PROM1O43490 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.13■□□□□ 0.17
PROM1O43490 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PROM1O43490 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.13■□□□□ 0.17
PROM1O43490 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.13■□□□□ 0.17
PROM1O43490 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.13■□□□□ 0.17
PROM1O43490 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.13■□□□□ 0.17
PROM1O43490 AC105339.3-201ENST00000560043 636 ntBASIC16.13■□□□□ 0.17
PROM1O43490 AC012640.2-201ENST00000561606 901 ntBASIC16.13■□□□□ 0.17
PROM1O43490 AL773604.1-201ENST00000617417 272 ntBASIC16.13■□□□□ 0.17
PROM1O43490 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PROM1O43490 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.13■□□□□ 0.17
PROM1O43490 FAM215A-202ENST00000632077 792 ntBASIC16.13■□□□□ 0.17
PROM1O43490 AL805961.1-202ENST00000641562 540 ntBASIC16.13■□□□□ 0.17
PROM1O43490 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PROM1O43490 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
PROM1O43490 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.13■□□□□ 0.17
PROM1O43490 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
PROM1O43490 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PROM1O43490 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.13■□□□□ 0.17
PROM1O43490 AC005915.1-201ENST00000624912 2018 ntBASIC16.12■□□□□ 0.17
PROM1O43490 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PROM1O43490 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.12■□□□□ 0.17
PROM1O43490 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PROM1O43490 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.12■□□□□ 0.17
PROM1O43490 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PROM1O43490 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms