Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 MINOS1P3-201ENST00000457048 203 ntBASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC39Q9UFE4 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 KRT17P6-201ENST00000453795 1220 ntBASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 AC011467.2-201ENST00000598425 242 ntBASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC39Q9UFE4 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC39Q9UFE4 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms