Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.86■□□□□ 0.61
BLOC1S4Q9NUP1 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 AC129492.6-201ENST00000611383 1305 ntBASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 AC093909.1-201ENST00000504731 1122 ntBASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 ACTL9-202ENST00000612068 1252 ntBASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
BLOC1S4Q9NUP1 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 IGLL3P-201ENST00000412472 434 ntBASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 PRSS29P-201ENST00000440800 595 ntBASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 AC010654.1-201ENST00000615722 808 ntBASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BLOC1S4Q9NUP1 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 AL671710.1-201ENST00000610245 2349 ntBASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
BLOC1S4Q9NUP1 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
BLOC1S4Q9NUP1 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
BLOC1S4Q9NUP1 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
BLOC1S4Q9NUP1 AC026396.1-201ENST00000419388 421 ntBASIC18.83■□□□□ 0.6
BLOC1S4Q9NUP1 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.83■□□□□ 0.6
BLOC1S4Q9NUP1 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BLOC1S4Q9NUP1 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.83■□□□□ 0.6
BLOC1S4Q9NUP1 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
BLOC1S4Q9NUP1 AC145285.3-201ENST00000564603 959 ntBASIC18.83■□□□□ 0.6
BLOC1S4Q9NUP1 AC091167.2-201ENST00000579581 588 ntBASIC18.83■□□□□ 0.6
BLOC1S4Q9NUP1 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BLOC1S4Q9NUP1 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms