Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 AC108073.2-201ENST00000464002 357 ntBASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 PENK-208ENST00000523051 772 ntTSL 5 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 PGM5P2-202ENST00000637225 1043 ntBASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 AC093909.1-201ENST00000504731 1122 ntBASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 GGTLC5P-201ENST00000617623 998 ntBASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 KRT8P49-201ENST00000604166 1432 ntBASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 AL645728.1-201ENST00000366221 2101 ntBASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC21.79■■□□□ 1.08
SMC4Q9NTJ3 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 FDX1P1-201ENST00000449115 551 ntBASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 CIPC-205ENST00000555437 566 ntTSL 3 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
SMC4Q9NTJ3 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 AC079776.4-201ENST00000511039 504 ntBASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 REXO1L3P-201ENST00000622202 1288 ntBASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC4Q9NTJ3 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
SMC4Q9NTJ3 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
SMC4Q9NTJ3 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SMC4Q9NTJ3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
SMC4Q9NTJ3 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC4Q9NTJ3 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms