Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CHMP1AQ9HD42 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 HYMAI-201ENST00000635591 3347 ntBASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 SAPCD2P2-201ENST00000431719 1174 ntBASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 AC092647.4-201ENST00000457211 535 ntBASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 AC005332.3-201ENST00000589904 676 ntBASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CHMP1AQ9HD42 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 AC116353.5-201ENST00000638148 1699 ntBASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 MYCLP1-201ENST00000372451 1075 ntBASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 MIR662-201ENST00000384847 95 ntBASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 HOMER2P1-201ENST00000455653 964 ntBASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 CNP-204ENST00000472031 1019 ntTSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms