Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
UPF3BQ9BZI7 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
UPF3BQ9BZI7 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
UPF3BQ9BZI7 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.31■□□□□ 0.84
UPF3BQ9BZI7 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
UPF3BQ9BZI7 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UPF3BQ9BZI7 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UPF3BQ9BZI7 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UPF3BQ9BZI7 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UPF3BQ9BZI7 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 FAAHP1-202ENST00000446499 1238 ntBASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 PRELID1P1-202ENST00000567272 903 ntBASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 MIR3652-201ENST00000579335 131 ntBASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 AC023511.2-201ENST00000618803 211 ntBASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UPF3BQ9BZI7 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 AC106795.1-205ENST00000512851 1056 ntBASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 AC064862.7-201ENST00000604520 867 ntBASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPF3BQ9BZI7 OR6D1P-203ENST00000641209 4860 ntBASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UPF3BQ9BZI7 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms