Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE1Q99829 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
CPNE1Q99829 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE1Q99829 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.01■□□□□ 0.31
CPNE1Q99829 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE1Q99829 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE1Q99829 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CPNE1Q99829 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17■□□□□ 0.31
CPNE1Q99829 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17■□□□□ 0.31
CPNE1Q99829 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CPNE1Q99829 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
CPNE1Q99829 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17■□□□□ 0.31
CPNE1Q99829 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17■□□□□ 0.31
CPNE1Q99829 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 AC010331.1-201ENST00000611423 582 ntBASIC17■□□□□ 0.31
CPNE1Q99829 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17■□□□□ 0.31
CPNE1Q99829 AL590326.2-201ENST00000625139 305 ntBASIC17■□□□□ 0.31
CPNE1Q99829 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17■□□□□ 0.31
CPNE1Q99829 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17■□□□□ 0.31
CPNE1Q99829 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
CPNE1Q99829 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPNE1Q99829 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.99■□□□□ 0.31
CPNE1Q99829 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.99■□□□□ 0.31
CPNE1Q99829 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.99■□□□□ 0.31
CPNE1Q99829 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.99■□□□□ 0.31
CPNE1Q99829 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
CPNE1Q99829 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.99■□□□□ 0.31
CPNE1Q99829 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.99■□□□□ 0.31
CPNE1Q99829 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.99■□□□□ 0.31
CPNE1Q99829 MIR5100-201ENST00000579544 119 ntBASIC16.99■□□□□ 0.31
CPNE1Q99829 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.99■□□□□ 0.31
CPNE1Q99829 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
CPNE1Q99829 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 AC099336.1-202ENST00000602961 463 ntBASIC16.99■□□□□ 0.31
CPNE1Q99829 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
CPNE1Q99829 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CPNE1Q99829 AP000550.4-202ENST00000639755 178 ntBASIC16.99■□□□□ 0.31
CPNE1Q99829 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CPNE1Q99829 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.99■□□□□ 0.31
CPNE1Q99829 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.99■□□□□ 0.31
CPNE1Q99829 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE1Q99829 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.99■□□□□ 0.31
CPNE1Q99829 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CPNE1Q99829 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 AL391005.1-201ENST00000623953 2435 ntBASIC16.98■□□□□ 0.31
CPNE1Q99829 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CPNE1Q99829 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CPNE1Q99829 KRT8P49-201ENST00000604166 1432 ntBASIC16.98■□□□□ 0.31
CPNE1Q99829 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.98■□□□□ 0.31
CPNE1Q99829 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CPNE1Q99829 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
CPNE1Q99829 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.98■□□□□ 0.31
CPNE1Q99829 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CPNE1Q99829 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.98■□□□□ 0.31
CPNE1Q99829 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms