Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00477Q96M19 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00477Q96M19 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 FXN-203ENST00000396366 922 ntTSL 2 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 DRAXINP1-201ENST00000437611 948 ntBASIC12.77□□□□□ -0.37
LINC00477Q96M19 TSSC2-201ENST00000450217 709 ntBASIC12.77□□□□□ -0.37
LINC00477Q96M19 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 AC005332.1-201ENST00000577698 1310 ntBASIC12.77□□□□□ -0.37
LINC00477Q96M19 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
LINC00477Q96M19 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00477Q96M19 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 KRT17P6-201ENST00000453795 1220 ntBASIC12.76□□□□□ -0.37
LINC00477Q96M19 AC091607.1-201ENST00000490318 1060 ntBASIC12.76□□□□□ -0.37
LINC00477Q96M19 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 PTK2-216ENST00000519881 863 ntTSL 3 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC12.76□□□□□ -0.37
LINC00477Q96M19 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms