Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
ERCC4Q92889 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
ERCC4Q92889 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
ERCC4Q92889 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
ERCC4Q92889 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.32■□□□□ 0.68
ERCC4Q92889 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.32■□□□□ 0.68
ERCC4Q92889 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
ERCC4Q92889 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
ERCC4Q92889 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 CHCHD2P8-201ENST00000429873 447 ntBASIC19.32■□□□□ 0.68
ERCC4Q92889 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.32■□□□□ 0.68
ERCC4Q92889 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 AP002383.4-201ENST00000442518 975 ntBASIC19.32■□□□□ 0.68
ERCC4Q92889 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.32■□□□□ 0.68
ERCC4Q92889 BX276092.5-203ENST00000456199 560 ntBASIC19.32■□□□□ 0.68
ERCC4Q92889 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.32■□□□□ 0.68
ERCC4Q92889 LINC01238-205ENST00000567549 1107 ntBASIC19.32■□□□□ 0.68
ERCC4Q92889 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.32■□□□□ 0.68
ERCC4Q92889 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.32■□□□□ 0.68
ERCC4Q92889 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
ERCC4Q92889 AC011467.2-201ENST00000598425 242 ntBASIC19.32■□□□□ 0.68
ERCC4Q92889 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.32■□□□□ 0.68
ERCC4Q92889 AC073592.5-201ENST00000624854 528 ntBASIC19.32■□□□□ 0.68
ERCC4Q92889 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.32■□□□□ 0.68
ERCC4Q92889 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.32■□□□□ 0.68
ERCC4Q92889 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
ERCC4Q92889 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.32■□□□□ 0.68
ERCC4Q92889 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC4Q92889 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.32■□□□□ 0.68
ERCC4Q92889 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.32■□□□□ 0.68
ERCC4Q92889 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC4Q92889 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC4Q92889 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
ERCC4Q92889 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.31■□□□□ 0.68
ERCC4Q92889 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.31■□□□□ 0.68
ERCC4Q92889 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC4Q92889 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
ERCC4Q92889 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
ERCC4Q92889 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC4Q92889 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.31■□□□□ 0.68
ERCC4Q92889 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC4Q92889 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.31■□□□□ 0.68
ERCC4Q92889 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.31■□□□□ 0.68
ERCC4Q92889 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC4Q92889 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC4Q92889 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC19.31■□□□□ 0.68
ERCC4Q92889 AL356309.3-201ENST00000624132 1934 ntBASIC19.31■□□□□ 0.68
ERCC4Q92889 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
ERCC4Q92889 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
ERCC4Q92889 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC4Q92889 AC233702.3-201ENST00000578656 1387 ntBASIC19.31■□□□□ 0.68
ERCC4Q92889 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC4Q92889 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.3■□□□□ 0.68
ERCC4Q92889 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
ERCC4Q92889 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
ERCC4Q92889 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.3■□□□□ 0.68
ERCC4Q92889 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.3■□□□□ 0.68
ERCC4Q92889 ALOX12P2-203ENST00000570921 1945 ntBASIC19.3■□□□□ 0.68
ERCC4Q92889 PCDHA1-201ENST00000378133 2726 ntBASIC19.3■□□□□ 0.68
ERCC4Q92889 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.3■□□□□ 0.68
ERCC4Q92889 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.3■□□□□ 0.68
ERCC4Q92889 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.3■□□□□ 0.68
ERCC4Q92889 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 KLF4P1-201ENST00000412782 1185 ntBASIC19.3■□□□□ 0.68
ERCC4Q92889 AC246785.2-201ENST00000432512 513 ntBASIC19.3■□□□□ 0.68
ERCC4Q92889 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.3■□□□□ 0.68
ERCC4Q92889 AC009533.2-201ENST00000543664 586 ntBASIC19.3■□□□□ 0.68
ERCC4Q92889 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
ERCC4Q92889 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.3■□□□□ 0.68
ERCC4Q92889 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC19.3■□□□□ 0.68
ERCC4Q92889 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ERCC4Q92889 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ERCC4Q92889 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms