Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AC136632.2-201ENST00000512891 861 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CFL1-212ENST00000531413 636 ntTSL 3 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 GOLGA6L17P-202ENST00000614358 1398 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CNTNAP3P2-201ENST00000617175 3861 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 PCDHA3-202ENST00000532566 4594 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ADM-208ENST00000534464 1640 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CYMP-203ENST00000474680 1263 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AP000997.3-201ENST00000623333 2250 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AL139400.1-201ENST00000366220 510 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SRP19-202ENST00000445150 833 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SIGLEC30P-201ENST00000455569 941 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 WIZP1-201ENST00000531444 2299 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 MIR3687-2-201ENST00000577708 61 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 MIR3687-1-201ENST00000614492 61 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 PP12613-201ENST00000424958 2230 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC5.27□□□□□ -1.57
SYNE1Q8NF91 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms