Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF549Q6P9A3 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 AC139887.3-201ENST00000568585 713 ntBASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 TUBB8P12-201ENST00000308911 1335 ntBASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 TUBB7P-202ENST00000428444 1305 ntBASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 TUBB8P7-204ENST00000567960 1332 ntBASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.87■□□□□ 0.29
ZNF549Q6P9A3 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 AL603756.1-201ENST00000606511 2163 ntBASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF549Q6P9A3 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 DUSP5P1-201ENST00000441325 1139 ntBASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 PAWRP1-201ENST00000451083 565 ntBASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.85■□□□□ 0.29
ZNF549Q6P9A3 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms