Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC88AQ3V6T2 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 FAM220BP-201ENST00000377689 816 ntBASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 AL512384.1-201ENST00000406683 331 ntBASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
CCDC88AQ3V6T2 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 MTND6P24-201ENST00000440466 518 ntBASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 AC018529.1-201ENST00000613063 361 ntBASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 AC068880.1-201ENST00000507289 2297 ntBASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC88AQ3V6T2 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
CCDC88AQ3V6T2 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC20.52■□□□□ 0.87
CCDC88AQ3V6T2 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC88AQ3V6T2 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.52■□□□□ 0.87
CCDC88AQ3V6T2 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC20.52■□□□□ 0.87
CCDC88AQ3V6T2 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC88AQ3V6T2 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.52■□□□□ 0.87
CCDC88AQ3V6T2 CHCHD2P3-201ENST00000603038 451 ntBASIC20.52■□□□□ 0.87
CCDC88AQ3V6T2 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC88AQ3V6T2 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC88AQ3V6T2 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms