Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 SNHG9-202ENST00000564014 471 ntBASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 STK25P1-201ENST00000585406 838 ntBASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC144BQ3MJ40 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 HTR5BP-201ENST00000430851 1154 ntBASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 STK19B-204ENST00000512515 211 ntBASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 AC116407.2-201ENST00000613639 860 ntBASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 AL805961.1-202ENST00000641562 540 ntBASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 GPR89P-201ENST00000407924 1495 ntBASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC144BQ3MJ40 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 BX276092.7-203ENST00000637198 1536 ntBASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 IGLL3P-201ENST00000412472 434 ntBASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 METTL21AP1-201ENST00000438852 635 ntBASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 AL078644.1-201ENST00000609881 752 ntBASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 FLJ38576-201ENST00000623820 2459 ntBASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 AC097637.2-201ENST00000624096 1997 ntBASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CCDC144BQ3MJ40 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms