Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 AC084121.4-201ENST00000641598 221 ntBASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 AF228730.8-201ENST00000642140 221 ntBASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 AL671710.1-201ENST00000610245 2349 ntBASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM1Q2M3G4 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 KRT8P49-201ENST00000604166 1432 ntBASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 LINC00895-201ENST00000629028 1637 ntBASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 IGHV3-62-201ENST00000520057 340 ntBASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 AP000842.3-202ENST00000569238 1080 ntBASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 AC027307.2-201ENST00000591252 911 ntBASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 AC141586.5-201ENST00000624546 2050 ntBASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SHROOM1Q2M3G4 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 MIR943-201ENST00000401286 94 ntBASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 TREML5P-201ENST00000421694 576 ntBASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 AC055876.3-201ENST00000431496 288 ntBASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 CNN2P2-201ENST00000443536 909 ntBASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 CNN2P3-201ENST00000450201 906 ntBASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 PPP6R2P1-201ENST00000450880 1275 ntBASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 AC138649.4-201ENST00000612222 287 ntBASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 AL136317.3-201ENST00000618497 906 ntBASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SHROOM1Q2M3G4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 AC108860.2-201ENST00000562760 2183 ntBASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 LINC02012-201ENST00000608206 1725 ntBASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 MIR4745-201ENST00000577608 62 ntBASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.68■□□□□ 0.74
SHROOM1Q2M3G4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SHROOM1Q2M3G4 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM1Q2M3G4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SHROOM1Q2M3G4 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SHROOM1Q2M3G4 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM1Q2M3G4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms