Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 LINC00895-201ENST00000629028 1637 ntBASIC19.83■□□□□ 0.76
GABPAQ06546 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.83■□□□□ 0.76
GABPAQ06546 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
GABPAQ06546 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
GABPAQ06546 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
GABPAQ06546 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.82■□□□□ 0.76
GABPAQ06546 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
GABPAQ06546 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
GABPAQ06546 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
GABPAQ06546 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
GABPAQ06546 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
GABPAQ06546 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.82■□□□□ 0.76
GABPAQ06546 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.82■□□□□ 0.76
GABPAQ06546 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
GABPAQ06546 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.82■□□□□ 0.76
GABPAQ06546 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.82■□□□□ 0.76
GABPAQ06546 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
GABPAQ06546 AP001350.2-201ENST00000625104 1094 ntBASIC19.82■□□□□ 0.76
GABPAQ06546 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.82■□□□□ 0.76
GABPAQ06546 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
GABPAQ06546 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
GABPAQ06546 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
GABPAQ06546 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.82■□□□□ 0.76
GABPAQ06546 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
GABPAQ06546 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.82■□□□□ 0.76
GABPAQ06546 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
GABPAQ06546 BCL2-203ENST00000589955 5011 ntBASIC19.82■□□□□ 0.76
GABPAQ06546 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
GABPAQ06546 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
GABPAQ06546 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
GABPAQ06546 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
GABPAQ06546 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
GABPAQ06546 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
GABPAQ06546 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
GABPAQ06546 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.81■□□□□ 0.76
GABPAQ06546 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.81■□□□□ 0.76
GABPAQ06546 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.81■□□□□ 0.76
GABPAQ06546 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.81■□□□□ 0.76
GABPAQ06546 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.81■□□□□ 0.76
GABPAQ06546 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.81■□□□□ 0.76
GABPAQ06546 AC015911.4-201ENST00000588022 1070 ntBASIC19.81■□□□□ 0.76
GABPAQ06546 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.81■□□□□ 0.76
GABPAQ06546 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.81■□□□□ 0.76
GABPAQ06546 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
GABPAQ06546 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
GABPAQ06546 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.81■□□□□ 0.76
GABPAQ06546 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
GABPAQ06546 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
GABPAQ06546 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
GABPAQ06546 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.8■□□□□ 0.76
GABPAQ06546 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.8■□□□□ 0.76
GABPAQ06546 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
GABPAQ06546 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
GABPAQ06546 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.8■□□□□ 0.76
GABPAQ06546 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
GABPAQ06546 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.8■□□□□ 0.76
GABPAQ06546 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.8■□□□□ 0.76
GABPAQ06546 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.8■□□□□ 0.76
GABPAQ06546 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.8■□□□□ 0.76
GABPAQ06546 AC005237.2-201ENST00000434368 219 ntBASIC19.8■□□□□ 0.76
GABPAQ06546 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.8■□□□□ 0.76
GABPAQ06546 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.8■□□□□ 0.76
GABPAQ06546 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.8■□□□□ 0.76
GABPAQ06546 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 AC106028.4-201ENST00000614509 607 ntBASIC19.8■□□□□ 0.76
GABPAQ06546 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
GABPAQ06546 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
GABPAQ06546 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.8■□□□□ 0.76
GABPAQ06546 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
GABPAQ06546 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
GABPAQ06546 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
GABPAQ06546 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.79■□□□□ 0.76
GABPAQ06546 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
GABPAQ06546 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms