Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.77■□□□□ 0.44
HDAC4P56524 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.77■□□□□ 0.44
HDAC4P56524 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.77■□□□□ 0.44
HDAC4P56524 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.77■□□□□ 0.44
HDAC4P56524 AL031284.1-201ENST00000419297 478 ntBASIC17.77■□□□□ 0.44
HDAC4P56524 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 RPS15P9-201ENST00000494093 319 ntBASIC17.77■□□□□ 0.44
HDAC4P56524 AC136632.2-201ENST00000512891 861 ntBASIC17.77■□□□□ 0.44
HDAC4P56524 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.77■□□□□ 0.44
HDAC4P56524 AC105339.3-201ENST00000560043 636 ntBASIC17.77■□□□□ 0.44
HDAC4P56524 AL121894.2-201ENST00000602977 491 ntBASIC17.77■□□□□ 0.44
HDAC4P56524 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HDAC4P56524 AC011676.5-201ENST00000624864 2660 ntBASIC17.77■□□□□ 0.44
HDAC4P56524 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
HDAC4P56524 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
HDAC4P56524 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
HDAC4P56524 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
HDAC4P56524 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.77■□□□□ 0.43
HDAC4P56524 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HDAC4P56524 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.77■□□□□ 0.43
HDAC4P56524 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HDAC4P56524 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
HDAC4P56524 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 PCDHB17P-201ENST00000539533 2393 ntBASIC17.76■□□□□ 0.43
HDAC4P56524 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC4P56524 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC4P56524 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC4P56524 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HDAC4P56524 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.76■□□□□ 0.43
HDAC4P56524 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC4P56524 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HDAC4P56524 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.76■□□□□ 0.43
HDAC4P56524 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC4P56524 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HDAC4P56524 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.76■□□□□ 0.43
HDAC4P56524 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
HDAC4P56524 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDAC4P56524 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.76■□□□□ 0.43
HDAC4P56524 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
HDAC4P56524 RNF216P1-203ENST00000404404 2427 ntBASIC17.76■□□□□ 0.43
HDAC4P56524 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HDAC4P56524 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
HDAC4P56524 AGGF1P2-201ENST00000426656 2106 ntBASIC17.75■□□□□ 0.43
HDAC4P56524 PI4KAP1-204ENST00000612579 1703 ntBASIC17.75■□□□□ 0.43
HDAC4P56524 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.75■□□□□ 0.43
HDAC4P56524 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
HDAC4P56524 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.75■□□□□ 0.43
HDAC4P56524 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
HDAC4P56524 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.75■□□□□ 0.43
HDAC4P56524 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.75■□□□□ 0.43
HDAC4P56524 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.75■□□□□ 0.43
HDAC4P56524 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.75■□□□□ 0.43
HDAC4P56524 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.75■□□□□ 0.43
HDAC4P56524 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.75■□□□□ 0.43
HDAC4P56524 AL356488.2-201ENST00000602755 427 ntBASIC17.75■□□□□ 0.43
HDAC4P56524 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.75■□□□□ 0.43
HDAC4P56524 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
HDAC4P56524 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
HDAC4P56524 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.75■□□□□ 0.43
HDAC4P56524 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.75■□□□□ 0.43
HDAC4P56524 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.75■□□□□ 0.43
HDAC4P56524 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.75■□□□□ 0.43
HDAC4P56524 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
HDAC4P56524 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HDAC4P56524 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms