Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.94■□□□□ 0.46
LHX1P48742 AL121761.2-201ENST00000598007 1648 ntBASIC17.94■□□□□ 0.46
LHX1P48742 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
LHX1P48742 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.94■□□□□ 0.46
LHX1P48742 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
LHX1P48742 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.94■□□□□ 0.46
LHX1P48742 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.94■□□□□ 0.46
LHX1P48742 CEND1P1-201ENST00000451006 455 ntBASIC17.94■□□□□ 0.46
LHX1P48742 AC004967.1-201ENST00000453589 447 ntBASIC17.94■□□□□ 0.46
LHX1P48742 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.94■□□□□ 0.46
LHX1P48742 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.94■□□□□ 0.46
LHX1P48742 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.94■□□□□ 0.46
LHX1P48742 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.94■□□□□ 0.46
LHX1P48742 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.94■□□□□ 0.46
LHX1P48742 MIR4492-201ENST00000581627 80 ntBASIC17.94■□□□□ 0.46
LHX1P48742 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.94■□□□□ 0.46
LHX1P48742 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.94■□□□□ 0.46
LHX1P48742 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.94■□□□□ 0.46
LHX1P48742 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 AC092068.3-201ENST00000587894 2016 ntBASIC17.94■□□□□ 0.46
LHX1P48742 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
LHX1P48742 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.94■□□□□ 0.46
LHX1P48742 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.94■□□□□ 0.46
LHX1P48742 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.94■□□□□ 0.46
LHX1P48742 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.94■□□□□ 0.46
LHX1P48742 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.94■□□□□ 0.46
LHX1P48742 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LHX1P48742 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.93■□□□□ 0.46
LHX1P48742 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.93■□□□□ 0.46
LHX1P48742 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LHX1P48742 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
LHX1P48742 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LHX1P48742 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LHX1P48742 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.93■□□□□ 0.46
LHX1P48742 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.93■□□□□ 0.46
LHX1P48742 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
LHX1P48742 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
LHX1P48742 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.93■□□□□ 0.46
LHX1P48742 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.93■□□□□ 0.46
LHX1P48742 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.93■□□□□ 0.46
LHX1P48742 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.93■□□□□ 0.46
LHX1P48742 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.93■□□□□ 0.46
LHX1P48742 AC134684.3-201ENST00000641758 218 ntBASIC17.93■□□□□ 0.46
LHX1P48742 AC092902.6-201ENST00000641783 218 ntBASIC17.93■□□□□ 0.46
LHX1P48742 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.93■□□□□ 0.46
LHX1P48742 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.93■□□□□ 0.46
LHX1P48742 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX1P48742 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.92■□□□□ 0.46
LHX1P48742 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LHX1P48742 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.92■□□□□ 0.46
LHX1P48742 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
LHX1P48742 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.92■□□□□ 0.46
LHX1P48742 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LHX1P48742 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.92■□□□□ 0.46
LHX1P48742 AP006288.1-201ENST00000446065 395 ntBASIC17.92■□□□□ 0.46
LHX1P48742 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LHX1P48742 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms