Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
MSX2P35548 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
MSX2P35548 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.28■□□□□ 0.2
MSX2P35548 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
MSX2P35548 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.28■□□□□ 0.2
MSX2P35548 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX2P35548 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
MSX2P35548 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX2P35548 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX2P35548 AL353692.3-201ENST00000407031 1396 ntBASIC16.27■□□□□ 0.2
MSX2P35548 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.27■□□□□ 0.2
MSX2P35548 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
MSX2P35548 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
MSX2P35548 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.27■□□□□ 0.2
MSX2P35548 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX2P35548 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX2P35548 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX2P35548 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MSX2P35548 HMGA1P5-201ENST00000412453 271 ntBASIC16.27■□□□□ 0.2
MSX2P35548 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.27■□□□□ 0.2
MSX2P35548 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.27■□□□□ 0.2
MSX2P35548 AC034232.1-201ENST00000506026 1064 ntBASIC16.27■□□□□ 0.2
MSX2P35548 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.27■□□□□ 0.2
MSX2P35548 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.27■□□□□ 0.2
MSX2P35548 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.27■□□□□ 0.2
MSX2P35548 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MSX2P35548 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
MSX2P35548 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
MSX2P35548 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.2
MSX2P35548 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.27■□□□□ 0.2
MSX2P35548 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.27■□□□□ 0.2
MSX2P35548 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.27■□□□□ 0.2
MSX2P35548 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX2P35548 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX2P35548 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSX2P35548 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSX2P35548 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.27■□□□□ 0.19
MSX2P35548 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSX2P35548 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSX2P35548 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
MSX2P35548 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSX2P35548 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSX2P35548 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSX2P35548 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
MSX2P35548 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSX2P35548 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSX2P35548 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSX2P35548 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
MSX2P35548 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
MSX2P35548 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.27■□□□□ 0.19
MSX2P35548 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.27■□□□□ 0.19
MSX2P35548 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
MSX2P35548 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
MSX2P35548 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.26■□□□□ 0.19
MSX2P35548 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
MSX2P35548 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 MYCLP1-201ENST00000372451 1075 ntBASIC16.26■□□□□ 0.19
MSX2P35548 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.26■□□□□ 0.19
MSX2P35548 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.26■□□□□ 0.19
MSX2P35548 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX2P35548 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX2P35548 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX2P35548 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX2P35548 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.26■□□□□ 0.19
MSX2P35548 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.26■□□□□ 0.19
MSX2P35548 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
MSX2P35548 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX2P35548 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
MSX2P35548 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms