Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL590787.1-201ENST00000568856 1315 ntBASIC16.69■□□□□ 0.26
SHMT2P34897 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.69■□□□□ 0.26
SHMT2P34897 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
SHMT2P34897 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 AC105020.1-201ENST00000435356 2205 ntBASIC16.68■□□□□ 0.26
SHMT2P34897 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
SHMT2P34897 AL022342.1-201ENST00000400363 863 ntBASIC16.68■□□□□ 0.26
SHMT2P34897 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.68■□□□□ 0.26
SHMT2P34897 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.68■□□□□ 0.26
SHMT2P34897 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
SHMT2P34897 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
SHMT2P34897 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.68■□□□□ 0.26
SHMT2P34897 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SHMT2P34897 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.68■□□□□ 0.26
SHMT2P34897 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
SHMT2P34897 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.68■□□□□ 0.26
SHMT2P34897 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SHMT2P34897 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.67■□□□□ 0.26
SHMT2P34897 AC106886.4-201ENST00000623557 2502 ntBASIC16.67■□□□□ 0.26
SHMT2P34897 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
SHMT2P34897 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.67■□□□□ 0.26
SHMT2P34897 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.67■□□□□ 0.26
SHMT2P34897 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 PTCHD3P3-201ENST00000403073 906 ntBASIC16.67■□□□□ 0.26
SHMT2P34897 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.67■□□□□ 0.26
SHMT2P34897 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.67■□□□□ 0.26
SHMT2P34897 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.67■□□□□ 0.26
SHMT2P34897 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.67■□□□□ 0.26
SHMT2P34897 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.67■□□□□ 0.26
SHMT2P34897 RNA5SP415-201ENST00000517246 115 ntBASIC16.67■□□□□ 0.26
SHMT2P34897 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.67■□□□□ 0.26
SHMT2P34897 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.67■□□□□ 0.26
SHMT2P34897 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.67■□□□□ 0.26
SHMT2P34897 AC008667.4-201ENST00000607370 168 ntBASIC16.67■□□□□ 0.26
SHMT2P34897 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 AGGF1P2-201ENST00000426656 2106 ntBASIC16.67■□□□□ 0.26
SHMT2P34897 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SHMT2P34897 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SHMT2P34897 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.67■□□□□ 0.26
SHMT2P34897 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SHMT2P34897 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.67■□□□□ 0.26
SHMT2P34897 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SHMT2P34897 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
SHMT2P34897 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.66■□□□□ 0.26
SHMT2P34897 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.66■□□□□ 0.26
SHMT2P34897 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.66■□□□□ 0.26
SHMT2P34897 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.66■□□□□ 0.26
SHMT2P34897 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SHMT2P34897 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.66■□□□□ 0.26
SHMT2P34897 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SHMT2P34897 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHMT2P34897 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.66■□□□□ 0.26
SHMT2P34897 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SHMT2P34897 RPL13AP23-201ENST00000480739 586 ntBASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms