Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
COL4A5P29400 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A5P29400 AL671710.1-201ENST00000610245 2349 ntBASIC20.1■□□□□ 0.81
COL4A5P29400 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
COL4A5P29400 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.09■□□□□ 0.81
COL4A5P29400 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 ANKRD19P-201ENST00000338192 862 ntBASIC20.09■□□□□ 0.81
COL4A5P29400 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 AC114501.2-201ENST00000439631 535 ntBASIC20.09■□□□□ 0.81
COL4A5P29400 TTTY23B-201ENST00000442790 549 ntBASIC20.09■□□□□ 0.81
COL4A5P29400 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.09■□□□□ 0.81
COL4A5P29400 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.09■□□□□ 0.81
COL4A5P29400 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC20.09■□□□□ 0.81
COL4A5P29400 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.09■□□□□ 0.81
COL4A5P29400 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.09■□□□□ 0.81
COL4A5P29400 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A5P29400 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.81
COL4A5P29400 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A5P29400 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC20.08■□□□□ 0.81
COL4A5P29400 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A5P29400 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A5P29400 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC20.08■□□□□ 0.81
COL4A5P29400 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A5P29400 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A5P29400 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.08■□□□□ 0.81
COL4A5P29400 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A5P29400 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A5P29400 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A5P29400 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC20.08■□□□□ 0.81
COL4A5P29400 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.08■□□□□ 0.81
COL4A5P29400 RN7SL618P-201ENST00000477850 296 ntBASIC20.08■□□□□ 0.81
COL4A5P29400 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.08■□□□□ 0.81
COL4A5P29400 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC20.08■□□□□ 0.81
COL4A5P29400 RAB43P1-201ENST00000561790 589 ntBASIC20.08■□□□□ 0.81
COL4A5P29400 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC20.08■□□□□ 0.81
COL4A5P29400 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC20.08■□□□□ 0.81
COL4A5P29400 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC20.08■□□□□ 0.81
COL4A5P29400 CTBP2P3-201ENST00000585629 1255 ntBASIC20.08■□□□□ 0.81
COL4A5P29400 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.08■□□□□ 0.81
COL4A5P29400 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.08■□□□□ 0.81
COL4A5P29400 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.08■□□□□ 0.8
COL4A5P29400 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
COL4A5P29400 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL4A5P29400 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL4A5P29400 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC20.08■□□□□ 0.8
COL4A5P29400 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.08■□□□□ 0.8
COL4A5P29400 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.08■□□□□ 0.8
COL4A5P29400 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.08■□□□□ 0.8
COL4A5P29400 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL4A5P29400 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC20.08■□□□□ 0.8
COL4A5P29400 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A5P29400 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A5P29400 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A5P29400 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A5P29400 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A5P29400 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.07■□□□□ 0.8
COL4A5P29400 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
COL4A5P29400 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.07■□□□□ 0.8
COL4A5P29400 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A5P29400 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.07■□□□□ 0.8
COL4A5P29400 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.07■□□□□ 0.8
COL4A5P29400 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.07■□□□□ 0.8
COL4A5P29400 AC092658.1-201ENST00000505836 891 ntBASIC20.07■□□□□ 0.8
COL4A5P29400 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.07■□□□□ 0.8
COL4A5P29400 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A5P29400 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC20.07■□□□□ 0.8
COL4A5P29400 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.07■□□□□ 0.8
COL4A5P29400 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A5P29400 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.07■□□□□ 0.8
COL4A5P29400 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A5P29400 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC20.07■□□□□ 0.8
COL4A5P29400 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.07■□□□□ 0.8
COL4A5P29400 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A5P29400 ELK1P1-201ENST00000485699 580 ntBASIC20.07■□□□□ 0.8
COL4A5P29400 AC023310.3-201ENST00000557027 670 ntBASIC20.07■□□□□ 0.8
COL4A5P29400 AC100756.1-201ENST00000562736 682 ntBASIC20.07■□□□□ 0.8
COL4A5P29400 AC138749.3-201ENST00000567691 622 ntBASIC20.07■□□□□ 0.8
COL4A5P29400 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A5P29400 AC116165.1-201ENST00000611806 668 ntBASIC20.07■□□□□ 0.8
COL4A5P29400 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
COL4A5P29400 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 AL354751.1-201ENST00000412768 1863 ntBASIC20.06■□□□□ 0.8
COL4A5P29400 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A5P29400 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.06■□□□□ 0.8
COL4A5P29400 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms