Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.1■□□□□ 0.17
COL5A1P20908 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.1■□□□□ 0.17
COL5A1P20908 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
COL5A1P20908 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.1■□□□□ 0.17
COL5A1P20908 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.1■□□□□ 0.17
COL5A1P20908 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.1■□□□□ 0.17
COL5A1P20908 AC016396.2-201ENST00000562575 1417 ntBASIC16.1■□□□□ 0.17
COL5A1P20908 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.1■□□□□ 0.17
COL5A1P20908 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL5A1P20908 CETN4P-206ENST00000642099 2168 ntBASIC16.1■□□□□ 0.17
COL5A1P20908 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.09■□□□□ 0.17
COL5A1P20908 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL5A1P20908 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.09■□□□□ 0.17
COL5A1P20908 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.09■□□□□ 0.17
COL5A1P20908 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.09■□□□□ 0.17
COL5A1P20908 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
COL5A1P20908 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.09■□□□□ 0.17
COL5A1P20908 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL5A1P20908 U91328.1-201ENST00000437528 223 ntBASIC16.09■□□□□ 0.17
COL5A1P20908 API5-211ENST00000534695 560 ntTSL 5 BASIC16.09■□□□□ 0.17
COL5A1P20908 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.09■□□□□ 0.17
COL5A1P20908 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
COL5A1P20908 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.09■□□□□ 0.17
COL5A1P20908 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.09■□□□□ 0.17
COL5A1P20908 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.09■□□□□ 0.17
COL5A1P20908 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COL5A1P20908 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL5A1P20908 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC16.09■□□□□ 0.17
COL5A1P20908 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL5A1P20908 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL5A1P20908 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL5A1P20908 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
COL5A1P20908 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
COL5A1P20908 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.17
COL5A1P20908 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.08■□□□□ 0.17
COL5A1P20908 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.08■□□□□ 0.17
COL5A1P20908 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL5A1P20908 ATP5G2P4-201ENST00000442175 420 ntBASIC16.08■□□□□ 0.17
COL5A1P20908 IGHV3-71-201ENST00000523324 359 ntBASIC16.08■□□□□ 0.17
COL5A1P20908 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.08■□□□□ 0.17
COL5A1P20908 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.08■□□□□ 0.17
COL5A1P20908 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.08■□□□□ 0.17
COL5A1P20908 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.08■□□□□ 0.17
COL5A1P20908 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.08■□□□□ 0.17
COL5A1P20908 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.08■□□□□ 0.17
COL5A1P20908 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.08■□□□□ 0.16
COL5A1P20908 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
COL5A1P20908 AC087499.5-201ENST00000452760 1342 ntBASIC16.08■□□□□ 0.16
COL5A1P20908 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.08■□□□□ 0.16
COL5A1P20908 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
COL5A1P20908 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.08■□□□□ 0.16
COL5A1P20908 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
COL5A1P20908 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.08■□□□□ 0.16
COL5A1P20908 KRT17P7-201ENST00000451704 1104 ntBASIC16.08■□□□□ 0.16
COL5A1P20908 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.08■□□□□ 0.16
COL5A1P20908 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.08■□□□□ 0.16
COL5A1P20908 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL5A1P20908 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
COL5A1P20908 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
COL5A1P20908 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.08■□□□□ 0.16
COL5A1P20908 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.07■□□□□ 0.16
COL5A1P20908 FRMD8P1-201ENST00000440433 1524 ntBASIC16.07■□□□□ 0.16
COL5A1P20908 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.07■□□□□ 0.16
COL5A1P20908 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
COL5A1P20908 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms