Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 ABCD1P5-201ENST00000445663 754 ntBASIC16.82■□□□□ 0.28
COL6A2P12110 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.82■□□□□ 0.28
COL6A2P12110 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.82■□□□□ 0.28
COL6A2P12110 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.82■□□□□ 0.28
COL6A2P12110 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A2P12110 AP002414.4-201ENST00000589764 1148 ntBASIC16.82■□□□□ 0.28
COL6A2P12110 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.82■□□□□ 0.28
COL6A2P12110 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.82■□□□□ 0.28
COL6A2P12110 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A2P12110 AC092329.2-201ENST00000598402 547 ntBASIC16.82■□□□□ 0.28
COL6A2P12110 AL139011.1-202ENST00000642063 584 ntBASIC16.82■□□□□ 0.28
COL6A2P12110 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A2P12110 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A2P12110 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A2P12110 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A2P12110 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A2P12110 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL6A2P12110 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A2P12110 AC004817.3-201ENST00000602957 2129 ntBASIC16.82■□□□□ 0.28
COL6A2P12110 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A2P12110 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A2P12110 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
COL6A2P12110 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A2P12110 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A2P12110 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.81■□□□□ 0.28
COL6A2P12110 AC006538.1-201ENST00000567905 1585 ntBASIC16.81■□□□□ 0.28
COL6A2P12110 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
COL6A2P12110 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL6A2P12110 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 KRT8P49-201ENST00000604166 1432 ntBASIC16.81■□□□□ 0.28
COL6A2P12110 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.81■□□□□ 0.28
COL6A2P12110 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.81■□□□□ 0.28
COL6A2P12110 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.81■□□□□ 0.28
COL6A2P12110 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A2P12110 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A2P12110 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 LINC00982-205ENST00000420957 435 ntBASIC16.81■□□□□ 0.28
COL6A2P12110 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A2P12110 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.81■□□□□ 0.28
COL6A2P12110 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.81■□□□□ 0.28
COL6A2P12110 AC013467.2-201ENST00000605472 835 ntBASIC16.81■□□□□ 0.28
COL6A2P12110 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A2P12110 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A2P12110 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
COL6A2P12110 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 AC079776.2-201ENST00000641154 1609 ntBASIC16.81■□□□□ 0.28
COL6A2P12110 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL6A2P12110 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A2P12110 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A2P12110 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.8■□□□□ 0.28
COL6A2P12110 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.8■□□□□ 0.28
COL6A2P12110 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
COL6A2P12110 PCED1CP-201ENST00000419887 785 ntBASIC16.8■□□□□ 0.28
COL6A2P12110 LINC00265-3P-201ENST00000447588 903 ntBASIC16.8■□□□□ 0.28
COL6A2P12110 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
COL6A2P12110 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
COL6A2P12110 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
COL6A2P12110 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.8■□□□□ 0.28
COL6A2P12110 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A2P12110 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
COL6A2P12110 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms