Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC18.79■□□□□ 0.6
TPM1P09493 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.79■□□□□ 0.6
TPM1P09493 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TPM1P09493 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 BX664615.1-201ENST00000443558 458 ntBASIC18.79■□□□□ 0.6
TPM1P09493 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TPM1P09493 GUSBP12-201ENST00000513727 720 ntBASIC18.79■□□□□ 0.6
TPM1P09493 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.79■□□□□ 0.6
TPM1P09493 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.79■□□□□ 0.6
TPM1P09493 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
TPM1P09493 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TPM1P09493 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
TPM1P09493 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
TPM1P09493 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.78■□□□□ 0.6
TPM1P09493 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
TPM1P09493 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.78■□□□□ 0.6
TPM1P09493 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.78■□□□□ 0.6
TPM1P09493 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TPM1P09493 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.78■□□□□ 0.6
TPM1P09493 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.78■□□□□ 0.6
TPM1P09493 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.78■□□□□ 0.6
TPM1P09493 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TPM1P09493 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 AC010203.1-204ENST00000548782 407 ntBASIC18.78■□□□□ 0.6
TPM1P09493 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TPM1P09493 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.78■□□□□ 0.6
TPM1P09493 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TPM1P09493 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.78■□□□□ 0.6
TPM1P09493 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TPM1P09493 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 AC007950.2-201ENST00000615045 2347 ntBASIC18.78■□□□□ 0.6
TPM1P09493 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TPM1P09493 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.78■□□□□ 0.6
TPM1P09493 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.77■□□□□ 0.6
TPM1P09493 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.77■□□□□ 0.6
TPM1P09493 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 MIR600HG-201ENST00000449175 5984 ntBASIC18.77■□□□□ 0.6
TPM1P09493 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
TPM1P09493 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 HBZP1-201ENST00000354915 429 ntBASIC18.77■□□□□ 0.6
TPM1P09493 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.77■□□□□ 0.6
TPM1P09493 YBX1P2-201ENST00000489612 999 ntBASIC18.77■□□□□ 0.6
TPM1P09493 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.77■□□□□ 0.6
TPM1P09493 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.77■□□□□ 0.6
TPM1P09493 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
TPM1P09493 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TPM1P09493 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.77■□□□□ 0.59
TPM1P09493 GPR89P-201ENST00000407924 1495 ntBASIC18.77■□□□□ 0.59
TPM1P09493 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TPM1P09493 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TPM1P09493 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.76■□□□□ 0.59
TPM1P09493 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TPM1P09493 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TPM1P09493 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.76■□□□□ 0.59
TPM1P09493 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.76■□□□□ 0.59
TPM1P09493 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms