Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 MRPL3P1-201ENST00000400109 1033 ntBASIC19.65■□□□□ 0.74
CTDNEP1O95476 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 PMS2P1-201ENST00000431037 1228 ntBASIC19.65■□□□□ 0.74
CTDNEP1O95476 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 IGHV3-65-201ENST00000523210 341 ntBASIC19.65■□□□□ 0.74
CTDNEP1O95476 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 KRT126P-201ENST00000549467 1181 ntBASIC19.65■□□□□ 0.74
CTDNEP1O95476 AC105339.3-201ENST00000560043 636 ntBASIC19.65■□□□□ 0.74
CTDNEP1O95476 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 AL356488.2-201ENST00000602755 427 ntBASIC19.65■□□□□ 0.74
CTDNEP1O95476 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 MIR7706-201ENST00000613747 67 ntBASIC19.65■□□□□ 0.74
CTDNEP1O95476 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 AC079328.2-201ENST00000561241 3354 ntBASIC19.65■□□□□ 0.74
CTDNEP1O95476 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 AC006538.1-201ENST00000567905 1585 ntBASIC19.65■□□□□ 0.74
CTDNEP1O95476 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.65■□□□□ 0.74
CTDNEP1O95476 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTDNEP1O95476 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTDNEP1O95476 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CTDNEP1O95476 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.64■□□□□ 0.73
CTDNEP1O95476 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTDNEP1O95476 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CTDNEP1O95476 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.64■□□□□ 0.73
CTDNEP1O95476 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTDNEP1O95476 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.64■□□□□ 0.73
CTDNEP1O95476 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.64■□□□□ 0.73
CTDNEP1O95476 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTDNEP1O95476 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTDNEP1O95476 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.64■□□□□ 0.73
CTDNEP1O95476 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTDNEP1O95476 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.64■□□□□ 0.73
CTDNEP1O95476 AC006449.5-201ENST00000610658 2098 ntBASIC19.64■□□□□ 0.73
CTDNEP1O95476 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CTDNEP1O95476 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTDNEP1O95476 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTDNEP1O95476 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
CTDNEP1O95476 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CTDNEP1O95476 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.63■□□□□ 0.73
CTDNEP1O95476 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.63■□□□□ 0.73
CTDNEP1O95476 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CTDNEP1O95476 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.63■□□□□ 0.73
CTDNEP1O95476 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.63■□□□□ 0.73
CTDNEP1O95476 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CTDNEP1O95476 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 AC092364.2-201ENST00000596710 2692 ntBASIC19.63■□□□□ 0.73
CTDNEP1O95476 AC005052.1-201ENST00000625181 2492 ntBASIC19.63■□□□□ 0.73
CTDNEP1O95476 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTDNEP1O95476 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CTDNEP1O95476 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.63■□□□□ 0.73
CTDNEP1O95476 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDNEP1O95476 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDNEP1O95476 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CTDNEP1O95476 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDNEP1O95476 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.62■□□□□ 0.73
CTDNEP1O95476 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDNEP1O95476 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.62■□□□□ 0.73
CTDNEP1O95476 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms