Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC21.17■□□□□ 0.98
CACNA1FO60840 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC21.17■□□□□ 0.98
CACNA1FO60840 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1FO60840 PCGF3-213ENST00000620529 1899 ntBASIC21.16■□□□□ 0.98
CACNA1FO60840 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1FO60840 DPM2-202ENST00000373110 738 ntTSL 2 BASIC21.16■□□□□ 0.98
CACNA1FO60840 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC21.16■□□□□ 0.98
CACNA1FO60840 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC21.16■□□□□ 0.98
CACNA1FO60840 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1FO60840 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
CACNA1FO60840 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC21.16■□□□□ 0.98
CACNA1FO60840 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC21.16■□□□□ 0.98
CACNA1FO60840 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC21.16■□□□□ 0.98
CACNA1FO60840 AC008267.7-201ENST00000624570 1194 ntBASIC21.16■□□□□ 0.98
CACNA1FO60840 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1FO60840 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CACNA1FO60840 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CACNA1FO60840 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1FO60840 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1FO60840 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1FO60840 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC21.16■□□□□ 0.98
CACNA1FO60840 AC245100.5-201ENST00000452108 331 ntBASIC21.16■□□□□ 0.98
CACNA1FO60840 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC21.16■□□□□ 0.98
CACNA1FO60840 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
CACNA1FO60840 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC21.16■□□□□ 0.98
CACNA1FO60840 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1FO60840 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CACNA1FO60840 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC21.16■□□□□ 0.98
CACNA1FO60840 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC21.15■□□□□ 0.98
CACNA1FO60840 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.15■□□□□ 0.98
CACNA1FO60840 RNF216P1-203ENST00000404404 2427 ntBASIC21.15■□□□□ 0.98
CACNA1FO60840 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC21.15■□□□□ 0.98
CACNA1FO60840 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 OS9-205ENST00000413095 1660 ntTSL 2 BASIC21.15■□□□□ 0.98
CACNA1FO60840 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.15■□□□□ 0.98
CACNA1FO60840 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC21.15■□□□□ 0.98
CACNA1FO60840 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC21.15■□□□□ 0.98
CACNA1FO60840 AP000842.3-202ENST00000569238 1080 ntBASIC21.15■□□□□ 0.98
CACNA1FO60840 MPDU1-223ENST00000582151 728 ntBASIC21.15■□□□□ 0.98
CACNA1FO60840 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC21.15■□□□□ 0.98
CACNA1FO60840 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CACNA1FO60840 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC21.15■□□□□ 0.98
CACNA1FO60840 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CACNA1FO60840 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CACNA1FO60840 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CACNA1FO60840 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CACNA1FO60840 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC21.15■□□□□ 0.98
CACNA1FO60840 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
CACNA1FO60840 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC21.14■□□□□ 0.98
CACNA1FO60840 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CACNA1FO60840 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CACNA1FO60840 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CACNA1FO60840 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.98
CACNA1FO60840 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
CACNA1FO60840 GPS2P2-201ENST00000430745 888 ntBASIC21.14■□□□□ 0.98
CACNA1FO60840 AC093724.1-201ENST00000448659 1027 ntBASIC21.14■□□□□ 0.98
CACNA1FO60840 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC21.14■□□□□ 0.98
CACNA1FO60840 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC21.14■□□□□ 0.98
CACNA1FO60840 AC093520.2-201ENST00000561830 333 ntBASIC21.14■□□□□ 0.98
CACNA1FO60840 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC21.14■□□□□ 0.98
CACNA1FO60840 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1FO60840 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC21.14■□□□□ 0.97
CACNA1FO60840 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.14■□□□□ 0.97
CACNA1FO60840 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1FO60840 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CACNA1FO60840 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1FO60840 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1FO60840 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CACNA1FO60840 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1FO60840 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1FO60840 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1FO60840 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1FO60840 PMS2P2-201ENST00000425039 1128 ntBASIC21.14■□□□□ 0.97
CACNA1FO60840 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC21.14■□□□□ 0.97
CACNA1FO60840 RPL28-205ENST00000558131 444 ntTSL 5 BASIC21.14■□□□□ 0.97
CACNA1FO60840 AL691403.2-201ENST00000618460 490 ntBASIC21.14■□□□□ 0.97
CACNA1FO60840 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CACNA1FO60840 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC21.14■□□□□ 0.97
CACNA1FO60840 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CACNA1FO60840 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC21.13■□□□□ 0.97
CACNA1FO60840 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.13■□□□□ 0.97
CACNA1FO60840 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CACNA1FO60840 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC21.13■□□□□ 0.97
CACNA1FO60840 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms