Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 FAM58DP-201ENST00000428076 619 ntBASIC17.23■□□□□ 0.35
HOXC11O43248 FAM86GP-201ENST00000448322 971 ntBASIC17.23■□□□□ 0.35
HOXC11O43248 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC11O43248 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.23■□□□□ 0.35
HOXC11O43248 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.23■□□□□ 0.35
HOXC11O43248 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
HOXC11O43248 AC093512.1-201ENST00000617969 520 ntBASIC17.23■□□□□ 0.35
HOXC11O43248 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HOXC11O43248 AC084121.4-201ENST00000641598 221 ntBASIC17.23■□□□□ 0.35
HOXC11O43248 AF228730.8-201ENST00000642140 221 ntBASIC17.23■□□□□ 0.35
HOXC11O43248 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
HOXC11O43248 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC11O43248 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
HOXC11O43248 PRORSD1P-202ENST00000563365 2154 ntBASIC17.23■□□□□ 0.35
HOXC11O43248 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC11O43248 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HOXC11O43248 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXC11O43248 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXC11O43248 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
HOXC11O43248 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
HOXC11O43248 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
HOXC11O43248 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
HOXC11O43248 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HOXC11O43248 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
HOXC11O43248 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.22■□□□□ 0.35
HOXC11O43248 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.22■□□□□ 0.35
HOXC11O43248 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 GPS2P2-201ENST00000430745 888 ntBASIC17.22■□□□□ 0.35
HOXC11O43248 AC067863.1-201ENST00000494933 530 ntBASIC17.22■□□□□ 0.35
HOXC11O43248 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.22■□□□□ 0.35
HOXC11O43248 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 MIR4492-201ENST00000581627 80 ntBASIC17.22■□□□□ 0.35
HOXC11O43248 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 AP001059.3-201ENST00000619053 235 ntBASIC17.22■□□□□ 0.35
HOXC11O43248 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HOXC11O43248 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXC11O43248 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.22■□□□□ 0.35
HOXC11O43248 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXC11O43248 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.21■□□□□ 0.35
HOXC11O43248 NOC2LP2-201ENST00000407594 1944 ntBASIC17.21■□□□□ 0.35
HOXC11O43248 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.21■□□□□ 0.35
HOXC11O43248 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
HOXC11O43248 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXC11O43248 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXC11O43248 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.21■□□□□ 0.35
HOXC11O43248 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXC11O43248 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
HOXC11O43248 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.21■□□□□ 0.35
HOXC11O43248 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 IGHV3-62-201ENST00000520057 340 ntBASIC17.21■□□□□ 0.35
HOXC11O43248 AC124947.2-201ENST00000547118 1133 ntBASIC17.21■□□□□ 0.35
HOXC11O43248 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
HOXC11O43248 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
HOXC11O43248 AC011467.4-201ENST00000594891 528 ntBASIC17.21■□□□□ 0.35
HOXC11O43248 LINC02084-201ENST00000606069 1096 ntBASIC17.21■□□□□ 0.35
HOXC11O43248 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.21■□□□□ 0.35
HOXC11O43248 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
HOXC11O43248 LINC02012-201ENST00000608206 1725 ntBASIC17.21■□□□□ 0.35
HOXC11O43248 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXC11O43248 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.21■□□□□ 0.35
HOXC11O43248 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HOXC11O43248 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
HOXC11O43248 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC11O43248 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC11O43248 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HOXC11O43248 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXC11O43248 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms