Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.38■■□□□ 1.01
NPHP1O15259 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.38■■□□□ 1.01
NPHP1O15259 THTPA-204ENST00000554970 569 ntTSL 4 BASIC21.38■■□□□ 1.01
NPHP1O15259 THTPA-206ENST00000556015 535 ntTSL 3 BASIC21.38■■□□□ 1.01
NPHP1O15259 PRR29-209ENST00000582540 967 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC21.38■■□□□ 1.01
NPHP1O15259 AP001059.3-201ENST00000619053 235 ntBASIC21.38■■□□□ 1.01
NPHP1O15259 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC21.38■■□□□ 1.01
NPHP1O15259 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
NPHP1O15259 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 AC104581.1-202ENST00000635932 2618 ntBASIC21.38■■□□□ 1.01
NPHP1O15259 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC21.37■■□□□ 1.01
NPHP1O15259 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC21.37■■□□□ 1.01
NPHP1O15259 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP1O15259 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP1O15259 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP1O15259 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP1O15259 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
NPHP1O15259 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP1O15259 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP1O15259 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.37■■□□□ 1.01
NPHP1O15259 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP1O15259 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.37■■□□□ 1.01
NPHP1O15259 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC21.37■■□□□ 1.01
NPHP1O15259 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.37■■□□□ 1.01
NPHP1O15259 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP1O15259 AL512638.1-201ENST00000457493 794 ntBASIC21.37■■□□□ 1.01
NPHP1O15259 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.37■■□□□ 1.01
NPHP1O15259 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.37■■□□□ 1.01
NPHP1O15259 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.37■■□□□ 1.01
NPHP1O15259 BAD-207ENST00000544785 525 ntTSL 3 BASIC21.37■■□□□ 1.01
NPHP1O15259 AC051619.7-201ENST00000568314 623 ntBASIC21.37■■□□□ 1.01
NPHP1O15259 AL035252.4-201ENST00000624174 288 ntBASIC21.37■■□□□ 1.01
NPHP1O15259 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP1O15259 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP1O15259 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
NPHP1O15259 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC21.37■■□□□ 1.01
NPHP1O15259 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP1O15259 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.36■■□□□ 1.01
NPHP1O15259 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP1O15259 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP1O15259 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP1O15259 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP1O15259 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP1O15259 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP1O15259 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP1O15259 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP1O15259 AC015922.1-201ENST00000421102 1152 ntBASIC21.36■■□□□ 1.01
NPHP1O15259 TSPY16P-201ENST00000449843 468 ntBASIC21.36■■□□□ 1.01
NPHP1O15259 OARD1-208ENST00000469104 704 ntTSL 2 BASIC21.36■■□□□ 1.01
NPHP1O15259 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.36■■□□□ 1.01
NPHP1O15259 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC21.36■■□□□ 1.01
NPHP1O15259 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.36■■□□□ 1.01
NPHP1O15259 AC090164.3-201ENST00000610780 2143 ntBASIC21.36■■□□□ 1.01
NPHP1O15259 AL390754.1-201ENST00000619088 582 ntBASIC21.36■■□□□ 1.01
NPHP1O15259 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC21.36■■□□□ 1.01
NPHP1O15259 AF228730.6-201ENST00000641497 218 ntBASIC21.36■■□□□ 1.01
NPHP1O15259 AC084121.3-201ENST00000641716 218 ntBASIC21.36■■□□□ 1.01
NPHP1O15259 AC105233.6-201ENST00000642093 218 ntBASIC21.36■■□□□ 1.01
NPHP1O15259 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
NPHP1O15259 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC21.36■■□□□ 1.01
NPHP1O15259 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP1O15259 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
NPHP1O15259 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.36■■□□□ 1.01
NPHP1O15259 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
NPHP1O15259 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP1O15259 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
NPHP1O15259 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 AC012569.1-201ENST00000591191 1524 ntBASIC21.35■■□□□ 1.01
NPHP1O15259 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.35■■□□□ 1.01
NPHP1O15259 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
NPHP1O15259 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 AC138028.4-201ENST00000564984 1845 ntBASIC21.35■■□□□ 1.01
NPHP1O15259 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.35■■□□□ 1.01
NPHP1O15259 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
NPHP1O15259 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC21.35■■□□□ 1.01
NPHP1O15259 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC21.35■■□□□ 1.01
NPHP1O15259 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC21.35■■□□□ 1.01
NPHP1O15259 SPCS2P4-201ENST00000436160 681 ntBASIC21.35■■□□□ 1.01
NPHP1O15259 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC21.35■■□□□ 1.01
NPHP1O15259 AL512356.2-201ENST00000546955 174 ntBASIC21.35■■□□□ 1.01
NPHP1O15259 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC21.35■■□□□ 1.01
NPHP1O15259 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NPHP1O15259 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms