Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 AC091046.1-201ENST00000331871 207 ntBASIC12.99□□□□□ -0.33
COL6A5A8TX70 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 MPV17-206ENST00000402722 827 ntTSL 3 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 AKR7A2P1-201ENST00000460134 915 ntBASIC12.99□□□□□ -0.33
COL6A5A8TX70 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 REXO1L11P-201ENST00000620964 1927 ntBASIC12.99□□□□□ -0.33
COL6A5A8TX70 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC12.99□□□□□ -0.33
COL6A5A8TX70 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL6A5A8TX70 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 AC114501.1-201ENST00000445949 172 ntBASIC12.98□□□□□ -0.33
COL6A5A8TX70 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
COL6A5A8TX70 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL6A5A8TX70 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 DUX4L45-201ENST00000566406 1057 ntBASIC12.97□□□□□ -0.33
COL6A5A8TX70 RN7SL560P-201ENST00000577943 264 ntBASIC12.97□□□□□ -0.33
COL6A5A8TX70 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 AC020763.4-201ENST00000623414 4170 ntBASIC12.97□□□□□ -0.33
COL6A5A8TX70 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 AP001889.1-201ENST00000525414 633 ntBASIC12.97□□□□□ -0.33
COL6A5A8TX70 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC12.97□□□□□ -0.33
COL6A5A8TX70 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL6A5A8TX70 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms