Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 AL353732.1-201ENST00000569618 1459 ntBASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDHGA1Q9Y5H4 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 PIN1P1-201ENST00000412108 996 ntBASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 AP005018.1-201ENST00000525475 301 ntBASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 AP000842.3-202ENST00000569238 1080 ntBASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDHGA1Q9Y5H4 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 AC092580.3-201ENST00000430932 139 ntBASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 AC004890.2-204ENST00000481968 304 ntBASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDHGA1Q9Y5H4 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms