Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLCF1Q9UBD9 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 AC005332.8-201ENST00000622750 2735 ntBASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 CROCCP2-202ENST00000412962 2773 ntBASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 AC140658.5-201ENST00000438532 169 ntBASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 FRMD8P1-201ENST00000440433 1524 ntBASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 TOP3BP1-201ENST00000420768 1380 ntBASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CLCF1Q9UBD9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 AL353732.1-201ENST00000569618 1459 ntBASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 AC112191.1-201ENST00000523689 701 ntBASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 AL596442.2-201ENST00000610240 980 ntBASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 AL133373.2-201ENST00000623187 2828 ntBASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLCF1Q9UBD9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.08■□□□□ 0.01
CLCF1Q9UBD9 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CLCF1Q9UBD9 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
CLCF1Q9UBD9 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
CLCF1Q9UBD9 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
CLCF1Q9UBD9 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
CLCF1Q9UBD9 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
CLCF1Q9UBD9 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLCF1Q9UBD9 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLCF1Q9UBD9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLCF1Q9UBD9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
CLCF1Q9UBD9 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLCF1Q9UBD9 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CLCF1Q9UBD9 AC002056.1-201ENST00000395613 760 ntBASIC15.08■□□□□ 0
CLCF1Q9UBD9 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLCF1Q9UBD9 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.08■□□□□ 0
CLCF1Q9UBD9 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.08■□□□□ 0
CLCF1Q9UBD9 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms