Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 KRT8P49-201ENST00000604166 1432 ntBASIC13.17□□□□□ -0.3
CCDC140Q96MF4 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 RPS2P28-201ENST00000314255 741 ntBASIC13.17□□□□□ -0.3
CCDC140Q96MF4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 SLC25A6P4-201ENST00000586535 553 ntBASIC13.17□□□□□ -0.3
CCDC140Q96MF4 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 AL049840.3-201ENST00000602669 611 ntBASIC13.17□□□□□ -0.3
CCDC140Q96MF4 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 FLJ38576-201ENST00000623820 2459 ntBASIC13.17□□□□□ -0.3
CCDC140Q96MF4 AC002310.6-201ENST00000624451 1377 ntBASIC13.17□□□□□ -0.3
CCDC140Q96MF4 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC140Q96MF4 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 AL031284.1-201ENST00000419297 478 ntBASIC13.16□□□□□ -0.3
CCDC140Q96MF4 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 AC009078.2-202ENST00000463353 338 ntBASIC13.16□□□□□ -0.3
CCDC140Q96MF4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 AC008667.4-201ENST00000607370 168 ntBASIC13.16□□□□□ -0.3
CCDC140Q96MF4 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 AC117500.6-201ENST00000624871 588 ntBASIC13.16□□□□□ -0.3
CCDC140Q96MF4 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC140Q96MF4 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms