Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 KATNBL1P6-202ENST00000562413 1466 ntBASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC28AQ8IWP9 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 ID1-201ENST00000376105 1233 ntBASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 HLA-L-209ENST00000420110 1011 ntBASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 AC142086.2-201ENST00000569753 217 ntBASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 STK40-201ENST00000359297 4837 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 REXO1L2P-201ENST00000425429 2069 ntBASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28AQ8IWP9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 AC009090.5-201ENST00000624886 2285 ntBASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 KRT8P32-201ENST00000512863 1461 ntBASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 SOX15-203ENST00000570788 1093 ntBASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 GAMT-205ENST00000640762 751 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28AQ8IWP9 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms