Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 TSPY26P-202ENST00000565928 3884 ntBASIC15.45■□□□□ 0.06
SHFQ7M4L6 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 AC124947.2-201ENST00000547118 1133 ntBASIC15.45■□□□□ 0.06
SHFQ7M4L6 CLN6-204ENST00000564752 900 ntTSL 3 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.45■□□□□ 0.06
SHFQ7M4L6 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHFQ7M4L6 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 AC103564.2-201ENST00000432853 1299 ntBASIC15.44■□□□□ 0.06
SHFQ7M4L6 AC007967.3-201ENST00000434308 558 ntBASIC15.44■□□□□ 0.06
SHFQ7M4L6 AC063952.2-201ENST00000498792 1227 ntBASIC15.44■□□□□ 0.06
SHFQ7M4L6 AC122714.2-201ENST00000502787 707 ntBASIC15.44■□□□□ 0.06
SHFQ7M4L6 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 AC111152.3-201ENST00000569699 673 ntBASIC15.44■□□□□ 0.06
SHFQ7M4L6 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.44■□□□□ 0.06
SHFQ7M4L6 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 AC007950.2-201ENST00000615045 2347 ntBASIC15.44■□□□□ 0.06
SHFQ7M4L6 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SHFQ7M4L6 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHFQ7M4L6 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHFQ7M4L6 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SHFQ7M4L6 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.43■□□□□ 0.06
SHFQ7M4L6 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SHFQ7M4L6 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHFQ7M4L6 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
SHFQ7M4L6 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHFQ7M4L6 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHFQ7M4L6 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHFQ7M4L6 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SHFQ7M4L6 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.43■□□□□ 0.06
SHFQ7M4L6 CYP2T1P-202ENST00000641596 2535 ntBASIC15.43■□□□□ 0.06
SHFQ7M4L6 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.43■□□□□ 0.06
SHFQ7M4L6 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
SHFQ7M4L6 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHFQ7M4L6 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHFQ7M4L6 AC211429.1-201ENST00000415277 523 ntBASIC15.43■□□□□ 0.06
SHFQ7M4L6 AL645929.1-201ENST00000420084 975 ntBASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms